| ▼NCoreTests | |
| CCoreTests | |
| ▼NDepTests | |
| CDependencyTests | |
| ▼NIllumina | |
| ▼NInterOp | |
| ►NInterop | |
| ►NUnitTest | |
| CAbstractCorrectedIntensityMetricsTest | Confirm that the corrected intensity metrics InterOp works properly in C# |
| CAbstractImageMetricsTest | Confirm that the image metrics InterOp works properly in C# |
| CAbstractQMetricsTest | Confirm that the q-metrics InterOp works properly in C# |
| CAbstractRunInfoTest | Confirm that the run info XML parsing works properly in C# |
| CAbstractRunParametersTest | Confirm that the run info XML parsing works properly in C# |
| CCoreTests | Test C# Swig Wrapping |
| CCorrectedIntensityMetricsTestV2 | Confirm that the corrected intensity metrics InterOp works properly in C# for Version 2 of the format |
| CCorrectedIntensityMetricsTestV3 | Confirm that the corrected intensity metrics InterOp works properly in C# for Version 3 of the format |
| CDependencyTests | Test C# dependencies |
| CErrorMetricsTestV3 | Confirm that the Error metrics InterOp works properly in C# |
| CExtendedTileMetricsTestV2 | Confirm that the Extended Tile metrics InterOp works properly in C# |
| CExtractionMetricsPerformanceTestV2 | Test the performance of tabulating a large number of extraction metrics |
| CExtractionMetricsTestV2 | Confirm that the extraction metrics InterOp works properly in C# |
| CFlowcellMap | Test plotting q-score flowcell map |
| CImageMetricsTestV1 | Confirm that the image metrics InterOp works properly in C# for Version 1 of the format |
| CImageMetricsTestV2 | Confirm that the image metrics InterOp works properly in C# for Version 2 of the format |
| CImagingTableLogic | Test plotting data by cycle |
| CIndexMetricsTestV3 | Confirm that the index metrics InterOp works properly in C# |
| CIndexSummaryLogic | Test plotting % reads identified |
| CPlotDataByCycleTest | Test plotting data by cycle |
| CPlotDataByLaneTest | Test plotting data by lane |
| CPlotQScoreHeatmap | Test plotting q-score heat map |
| CPlotQScoreHistogram | Test plotting q-score histogram |
| CPlotSampleQC | Test plotting % reads identified |
| CProgram | Test C# Swig Wrapping |
| CQMetricsTestV4 | Confirm that the q-metrics InterOp works properly in C# for Version 4 of the format |
| CQMetricsTestV5 | Confirm that the q-metrics InterOp works properly in C# for Version 5 of the format |
| CQMetricsTestV6 | Confirm that the q-metrics InterOp works properly in C# for Version 6 of the format |
| CRunInfoMiSeqTest | Confirm that the run info XML parsing for MiSeq works properly in C# |
| CRunMetricsTests | Test C# Swig run_metrics Mapping |
| CRunParametersMiSeqTest | Confirm that the run info XML parsing for MiSeq works properly in C# |
| CTileMetricsTestV2 | Confirm that the tile metrics InterOp works properly in C# |
| ▼Nillumina | |
| ▼Ninterop | |
| ►Nconstants | |
| ►Ndetail | |
| Cfill_enum_name_vector | |
| Cfill_enum_vector | |
| Cenum_description | |
| Cenumeration_string_mapping | |
| Cenumeration_string_mapping< bar_plot_options > | |
| Cenumeration_string_mapping< dna_bases > | |
| Cenumeration_string_mapping< instrument_type > | |
| Cenumeration_string_mapping< metric_base_type > | |
| Cenumeration_string_mapping< metric_data > | |
| Cenumeration_string_mapping< metric_feature_type > | |
| Cenumeration_string_mapping< metric_group > | |
| Cenumeration_string_mapping< metric_type > | |
| Cenumeration_string_mapping< model::table::column_id > | |
| Cenumeration_string_mapping< plot_colors > | |
| Cenumeration_string_mapping< plot_types > | |
| Cenumeration_string_mapping< surface_type > | |
| Cenumeration_string_mapping< tile_naming_method > | |
| ►Nhierarchy | |
| Cbase_at | |
| Cbase_at< T, type_list< T1, T2 >, Base, Root > | |
| Cbase_at< T1, type_list< T1, null_type >, Base, Root > | |
| Cbase_at< T1, type_list< T1, T2 >, Base, Root > | |
| Clinear_hierarchy | |
| Clinear_hierarchy< null_type, Base, Root > | |
| Clinear_hierarchy< type_list< T, null_type >, Base, Root > | |
| Clinear_hierarchy< type_list< T1, T2 >, Base, Root > | |
| ►Nio | |
| ►Ndetail | |
| Cmatch_path_sep | |
| Cmembuf | |
| ►Nlayout | |
| Cbase_cycle_metric | |
| Cbase_metric | |
| Cbase_read_metric | |
| Cbase_run_metric | |
| ►Nplot | |
| Cgnuplot_writer | |
| Cabstract_metric_format | |
| Cabstract_text_format | |
| Cbad_format_exception | |
| Cdefault_layout | |
| Cfile_not_found_exception | |
| Cformat_exception | |
| Cgeneric_layout | |
| Cgeneric_layout< corrected_intensity_metric, 2 > | |
| Cgeneric_layout< corrected_intensity_metric, 3 > | |
| Cgeneric_layout< corrected_intensity_metric, 4 > | |
| Cgeneric_layout< dynamic_phasing_metric, 1 > | |
| Cgeneric_layout< error_metric, 3 > | |
| Cgeneric_layout< error_metric, 4 > | |
| Cgeneric_layout< error_metric, 5 > | |
| Cgeneric_layout< error_metric, 6 > | |
| Cgeneric_layout< extended_tile_metric, 1 > | |
| Cgeneric_layout< extended_tile_metric, 2 > | |
| Cgeneric_layout< extended_tile_metric, 3 > | |
| Cgeneric_layout< extraction_metric, 2 > | |
| Cgeneric_layout< extraction_metric, 3 > | |
| Cgeneric_layout< image_metric, 1 > | |
| Cgeneric_layout< image_metric, 2 > | |
| Cgeneric_layout< image_metric, 3 > | |
| Cgeneric_layout< index_flowcell_summary, 1 > | |
| Cgeneric_layout< index_metric, 1 > | |
| Cgeneric_layout< index_metric, 2 > | |
| Cgeneric_layout< phasing_metric, 1 > | |
| Cgeneric_layout< phasing_metric, 2 > | |
| Cgeneric_layout< q_by_lane_metric, 4 > | |
| Cgeneric_layout< q_by_lane_metric, 5 > | |
| Cgeneric_layout< q_by_lane_metric, 6 > | |
| Cgeneric_layout< q_collapsed_metric, 2 > | |
| Cgeneric_layout< q_collapsed_metric, 3 > | |
| Cgeneric_layout< q_collapsed_metric, 4 > | |
| Cgeneric_layout< q_collapsed_metric, 5 > | |
| Cgeneric_layout< q_collapsed_metric, 6 > | |
| Cgeneric_layout< q_metric, 4 > | |
| Cgeneric_layout< q_metric, 5 > | |
| Cgeneric_layout< q_metric, 6 > | |
| Cgeneric_layout< q_metric, 7 > | |
| Cgeneric_layout< run_summary, 1 > | |
| Cgeneric_layout< summary_run_metric, 1 > | |
| Cgeneric_layout< tile_metric, 2 > | |
| Cgeneric_layout< tile_metric, 3 > | |
| Cincomplete_file_exception | |
| Cinvalid_argument | |
| Cmetric_format | |
| Cmetric_format_factory | |
| Cpaths | |
| Cq_score_bin_layout | |
| Cread_array_helper | |
| Cread_array_helper< ReadType, ValueType, true > | |
| Ctext_format | |
| Ctext_format< Metric, text_layout< Metric, Version > > | |
| Ctext_format_factory | |
| Ctext_format_factory_proxy | |
| Ctext_layout | |
| Ctext_layout< corrected_intensity_metric, 1 > | |
| Ctext_layout< dynamic_phasing_metric, 1 > | |
| Ctext_layout< error_metric, 1 > | |
| Ctext_layout< error_metric, 2 > | |
| Ctext_layout< error_metric, 3 > | |
| Ctext_layout< extended_tile_metric, 1 > | |
| Ctext_layout< extended_tile_metric, 2 > | |
| Ctext_layout< extraction_metric, 1 > | |
| Ctext_layout< image_metric, 1 > | |
| Ctext_layout< index_metric, 1 > | |
| Ctext_layout< phasing_metric, 1 > | |
| Ctext_layout< q_by_lane_metric, 1 > | |
| Ctext_layout< q_collapsed_metric, 1 > | |
| Ctext_layout< q_metric, 1 > | |
| Ctext_layout< summary_run_metric, 1 > | |
| Ctext_layout< tile_metric, 1 > | |
| ►Nlogic | |
| ►Nmetric | |
| ►Ndetail | |
| Cby_cycle | |
| Clinear_fit | |
| Cmetric_value | |
| Cmetric_value< model::metrics::corrected_intensity_metric > | |
| Cmetric_value< model::metrics::error_metric > | |
| Cmetric_value< model::metrics::extraction_metric > | |
| Cmetric_value< model::metrics::phasing_metric > | |
| Cmetric_value< model::metrics::q_by_lane_metric > | |
| Cmetric_value< model::metrics::q_collapsed_metric > | |
| Cmetric_value< model::metrics::tile_metric > | |
| Cphasing_prephasing_fit | |
| ►Nplot | |
| Cby_cycle_average_plot | |
| Cby_cycle_candle_stick_plot | |
| Cby_lane_candle_stick_plot | |
| Cflowcell_plot | |
| Cplot_metric_proxy | |
| ►Nsummary | |
| ►Nop | |
| Cdefault_get_read | |
| Ctotal_cycle_sum | |
| Cerror_cache_element | |
| Cqval_cache | |
| Cqval_total | |
| Cread_cycle | |
| Csummary_by_lane_read | |
| ►Ntable | |
| Ccheck_imaging_table_column | |
| Ctable_populator | |
| ►Nmodel | |
| ►Nmetric_base | |
| Cbase_cycle_metric | |
| Cbase_cycle_metric_header | |
| Cbase_metric | |
| Cbase_metric_header | |
| Cbase_read_metric | |
| Cbase_read_metric_header | |
| Cempty_header | |
| Cempty_metric | |
| Cmetric_attributes | |
| Cmetric_attributes< base_cycle_metric > | |
| Cmetric_attributes< base_metric > | |
| Cmetric_attributes< base_read_metric > | |
| Cmetric_comparison | |
| Cmetric_comparison< Metric, constants::base_run_t > | |
| Cmetric_set | |
| Cmetric_set_helper | |
| Cmetric_set_helper< metric_set< Metric > > | |
| ►Nmetrics | |
| Cappend_tiles_functor | |
| Ccalculate_metric_set_buffer_size | |
| Ccheck_for_each_data_source | |
| Ccheck_if_group_is_empty | |
| Ccheck_if_groupid_is_empty | |
| Cclear_metric | |
| Ccorrected_intensity_metric | Intensity and count metrics for each base |
| Cdetermine_tile_naming_method | |
| Cdynamic_phasing_metric | |
| Cerror_metric | Error rate for a spiked in PhiX control sample |
| Cerror_metric_header | |
| Cextended_tile_metric | |
| Cextraction_metric | |
| Cextraction_metric_header | |
| Cimage_metric | |
| Cimage_metric_header | |
| Cindex_info | |
| Cindex_metric | |
| Cindex_metric_header | |
| Cis_metric_empty | |
| Clist_interop_filenames | |
| Cphasing_metric | |
| Cpoint2d | |
| Cpopulate_tile_cycle_list | |
| Cpopulate_tile_list | |
| Cq_by_lane_metric | |
| Cq_collapsed_header | |
| Cq_collapsed_metric | |
| Cq_metric | |
| Cq_metrics | |
| Cq_score_bin | |
| Cq_score_header | |
| Cread_by_cycle_func | |
| Cread_func | |
| Cread_metric | |
| Cread_metric_set_from_binary_buffer | |
| Crebuild_index | |
| Crun_metrics | |
| Csort_by_lane_tile_cycle | |
| Csummary_run_metric | |
| Ctile_metric | |
| Ctile_metric_header | |
| Cvalidate_run_info | |
| Cwrite_func | |
| Cwrite_metric_set_to_binary_buffer | |
| ►Nplot | |
| Caxes | |
| Caxis | |
| Cbar_point | |
| Ccandle_stick_point | |
| Cchart_data | |
| Cdata_point | |
| Cdata_point_collection | |
| Cfilter_options | |
| Cflowcell_data | |
| Cheatmap_data | |
| Cplot_data | |
| Cseries | |
| ►Nrun | |
| Ccycle_range | |
| Cflowcell_layout | |
| Cimage_dimensions | |
| Cinfo | |
| Cparameters | |
| Cread_info | |
| ►Nsummary | |
| Ccycle_state_summary | |
| Cindex_count_summary | |
| Cindex_flowcell_summary | |
| Cindex_lane_summary | |
| Clane_summary | |
| Cmetric_average | |
| Cmetric_stat | |
| Cmetric_summary | |
| Cread_summary | |
| Crun_summary | |
| Cstat_summary | |
| Csurface_summary | |
| ►Ntable | |
| Cimaging_column | |
| Cimaging_table | |
| Cimaging_table_id_less | |
| Cindex_out_of_bounds_exception | |
| Cinvalid_channel_exception | |
| Cinvalid_column_type | |
| Cinvalid_filter_option | |
| Cinvalid_metric_type | |
| Cinvalid_parameter | |
| Cinvalid_read_exception | |
| Cinvalid_run_info_cycle_exception | |
| Cinvalid_run_info_exception | |
| Cinvalid_tile_list_exception | |
| Cinvalid_tile_naming_method | |
| ►Nunittest | |
| Cabstract_generator | |
| Cabstract_regression_test_generator | |
| Cargument_generator | |
| Cargument_iterator | |
| Cby_cycle_metric_generator | |
| Cclear_metric_generator | |
| Ccollapsed_q_plot_test_generator | |
| Ccorrected_intensity_metric_v2 | |
| Ccorrected_intensity_metric_v3 | |
| Ccorrected_intensity_metric_v4 | |
| Cempty_plot_test_generator | |
| Cerror_metric_requirements | |
| Cerror_metric_v3 | |
| Cerror_metric_v4 | |
| Cerror_metric_v5 | |
| Cerror_metric_v6 | |
| Cextended_tile_metric_v1 | |
| Cextended_tile_metric_v2 | |
| Cextended_tile_metric_v3 | |
| Cextraction_metric_v2 | |
| Cextraction_metric_v3 | |
| Cfailure_listener | |
| Cformat_registry | |
| Cgenerator_ptr | |
| Cgeneric_test_fixture | |
| Chardcoded_metric_generator | |
| Chiseq2500_run_info | |
| Chiseq4k_run_info | |
| Cimage_metric_v1 | |
| Cimage_metric_v2 | |
| Cimage_metric_v3 | |
| Cindex_metric_v1 | |
| Cindex_metric_v2 | |
| Citerator_parameter_generator | |
| Cmetric_filter_iterator | |
| Cmetric_test | |
| Cminiseq_run_info | |
| Cmiseq_run_info | |
| Cnextseq1k2k_run_info | |
| Cnextseq1k2k_run_info_large | |
| Cnextseq_550_run_info | |
| Cnovaseq_run_info | |
| Cphasing_metric_v1 | |
| Cphasing_metric_v2 | |
| Cplot_regression_test_generator | |
| Cproxy_argument_generator | |
| Cproxy_argument_iterator | |
| Cq_collapsed_metric_no_median_v2 | |
| Cq_collapsed_metric_no_median_v3 | |
| Cq_collapsed_metric_no_median_v4 | |
| Cq_collapsed_metric_no_median_v5 | |
| Cq_collapsed_metric_no_median_v5_6 | |
| Cq_collapsed_metric_no_median_v6 | |
| Cq_collapsed_metric_no_median_v_2_4 | |
| Cq_collapsed_metric_v2 | |
| Cq_collapsed_metric_v3 | |
| Cq_collapsed_metric_v4 | |
| Cq_collapsed_metric_v5 | |
| Cq_collapsed_metric_v5_6 | |
| Cq_collapsed_metric_v6 | |
| Cq_collapsed_metric_v_2_4 | |
| Cq_metric_requirements | |
| Cq_metric_v4 | |
| Cq_metric_v5 | |
| Cq_metric_v6 | |
| Cq_metric_v6_unbinned | |
| Cq_metric_v7 | |
| Cregistry_factory | |
| Cregression_test_data | |
| Cregression_test_metric_generator | |
| Csparse_value | |
| Cstandard_parameter_generator | |
| Csummary_run_v1 | |
| Ctile_metric_v2 | |
| Ctile_metric_v3 | |
| Cwrite_read_metric_generator | |
| ►Nutil | |
| ►Ndetail | |
| Cenum_hash | |
| ►Nop | |
| Cconst_member_function_less_w | |
| Cconst_member_function_w | |
| Cconst_member_function_w< T, R, parameter_none_type > | |
| Cdummy_arg | |
| Cnan_check | |
| Coperator_none | |
| Cparameter_none_type | |
| Cabstract_option | |
| Cabstract_range_iterator | |
| Cbase_exception | |
| Cchain_range_iterator | |
| Cconstant_mapping | |
| Ccsharp_date_time | |
| Cindirect_range_iterator | |
| Cinvalid_option_exception | |
| Cinvalid_option_value_exception | |
| Clength_of_type | |
| Clength_of_type< std::vector< T > > | |
| Clexical_cast_helper | |
| Clexical_cast_helper< char *, Destination > | |
| Clexical_cast_helper< char *, std::string > | |
| Clexical_cast_helper< const char *, Destination > | |
| Clexical_cast_helper< const char *, std::string > | |
| Clexical_cast_helper< const Source &, std::string > | |
| Clexical_cast_helper< Source, std::string > | |
| Clexical_cast_helper< std::string, const char * > | |
| Clexical_cast_helper< std::string, Destination > | |
| Clexical_cast_helper< std::string, std::string > | |
| Coption | |
| Coption_exception | |
| Coption_parser | |
| Cscoped_timer | |
| CStringCaseInsensitiveComparator | |
| Cvalue_container | |
| Cvalue_container< R(T::*)(P1) > | |
| ►Nxml | |
| Cbad_xml_format_exception | |
| Cempty_xml_format_exception | |
| Cmissing_xml_element_exception | |
| Cxml_document | |
| Cxml_file_not_found_exception | |
| Cxml_format_exception | |
| Cxml_parse_exception | |
| Cconditional | |
| Cconditional< false, T, F > | |
| Cconstant_type | |
| Cfalse_type | |
| Cint_constant_type | |
| Cis_const | |
| Cis_const< const T > | |
| Cis_exact_binary | |
| Cis_exact_binary< T, T > | |
| Cis_pointer | |
| Cis_pointer< T * > | |
| Cis_same | |
| Cis_same< T, T > | |
| Clast_node | |
| Cmake_type_list | |
| Cmake_type_list<> | |
| Cnull_type | |
| Cobject_list | |
| Cobject_list_node | |
| Ctransform_type_list | |
| Ctransform_type_list< null_type, Transform > | |
| Ctransform_type_list< type_list< T1, null_type >, Transform > | |
| Ctransform_type_list< type_list< T1, T2 >, Transform > | |
| Ctrue_type | |
| Ctype_list | |
| Cbar_plot_tests | |
| Cbar_write_read_generator | |
| Ccandle_stick_read_generator | |
| Ccandle_stick_tests | |
| Ccorrected_intensity_metrics_tests | |
| Cenum_list_test | |
| Cerror_metrics_tests | |
| Cextended_tile_metrics_tests | |
| Cextraction_metrics_tests | |
| Cflowcell_plot_tests | |
| Cflowcell_write_read_generator | |
| Cformat_coverage_test | |
| Cheatmap_plot_tests | |
| Cheatmap_write_read_generator | |
| Cimage_metrics_tests | |
| Cimaging_table_regression_test | |
| Cimaging_table_tests | |
| Cimaging_write_read_generator | |
| CImagingTableExample | |
| Cindex_metrics_tests | |
| Cindex_summary_generator | |
| Cindex_summary_tests | |
| Cindex_write_read_generator | |
| Cmetric_coverage_test | |
| Cmetric_stream_error_test | |
| Cmetric_stream_test | |
| Cmetric_writer | |
| Cphasing_metrics_tests | |
| Cq_collapsed_metrics_tests | |
| Cq_metrics_tests | |
| Cread_fixture | |
| Cregression_test_index_summary_generator | |
| Cregression_test_metric_generator | |
| Cregression_test_summary_generator | |
| Crun_info_fixture | |
| Crun_metric_test | |
| Crun_metrics_tests | |
| Crun_summary_generator | |
| Crun_summary_tests | |
| Csubset_copier | |
| Csummary_logic | |
| Csummary_run_metrics_tests | |
| Csummary_write_read_generator | |
| CSummaryExample | |
| Ctile_metrics_tests | |
| Cwrite_metric_generator | |
| Cwrite_read_fixture | |