#include <metric_summary.h>

Public Member Functions
	metric_summary (const size_t)

float	error_rate () const

float	percent_aligned () const

float	first_cycle_intensity () const

float	percent_gt_q30 () const

float	yield_g () const

float	projected_yield_g () const

float	percent_occupied () const

float	percent_occupancy_proxy () const

double	cluster_count () const

double	cluster_count_pf () const

uint64_t	reads () const

uint64_t	reads_pf () const

void	first_cycle_intensity (const float val)

void	error_rate (const float val)

void	percent_aligned (const float val)

void	percent_gt_q30 (const float val)

void	yield_g (const float val)

void	projected_yield_g (const float val)

void	percent_occupied (const float val)

void	percent_occupancy_proxy (const float val)

void	resize (const size_t)

void	cluster_count (const double val)

void	cluster_count_pf (const double val)

void	reads (const uint64_t val)

void	reads_pf (const uint64_t val)

Friends
template<class MetricType , int Version>
struct	io::generic_layout

Detailed Description

Summary statistics by read, total and non-indexed

Constructor & Destructor Documentation

metric_summary ( const size_t )

inline

Constructor

Member Function Documentation

void cluster_count ( const double val )

inline

Set the cluster count of the run

Parameters

val	cluster count of the run.

void cluster_count_pf ( const double val )

inline

Set the cluster count PF of the run

Parameters

val	cluster count PF of the run.

void error_rate ( const float val )

inline

Set the error rate of PHIX for the run

Parameters

val	error rate of PHIX for run

void first_cycle_intensity ( const float val )

inline

Set the first cycle intensity

Parameters

val	first cycle intensity

void percent_aligned ( const float val )

inline

Set the percent aligned PHIX for the run

Parameters

val	percent aligned PHIX

void percent_gt_q30 ( const float val )

inline

Set the percent of bases greater than or equal to Q30

Parameters

val	percent of bases greater than or equal to Q30

void percent_occupancy_proxy ( const float val )

inline

Set the percent occupancy proxy

Also known as % loading concentration

Parameters

val	percent occupancy proxy

void percent_occupied ( const float val )

inline

Set the percent occupied

Parameters

val	percent occupied

void projected_yield_g ( const float val )

inline

Set the projected yield of the run in gigabases

Parameters

val	projected yield of the run in gigabases

void reads ( const uint64_t val )

inline

Set the total reads for the run

Parameters

val	total reads for run

void reads_pf ( const uint64_t val )

inline

Set the reads PF for the run

Parameters

val	reads PF for run

void resize ( const size_t )

inline

Resize the underlying data

void yield_g ( const float val )

inline

Set the yield of the run in gigabases

Parameters

val	yield of the run in gigabases

Friends And Related Function Documentation

friend struct io::generic_layout

friend

The documentation for this class was generated from the following file:

/io/interop/model/summary/metric_summary.h

Public Member Functions

Friends

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation