#include <flowcell_data.h>

Inheritance diagram for flowcell_data:

Public Member Functions
flowcell_data ()

virtual ~flowcell_data ()

::uint32_t tile_at (const size_t index) const

::uint32_t tile_id (const size_t lane_idx, const size_t loc) const INTEROP_THROW_SPEC((model

const plot::axis & saxis () const

const std::string & subtitle () const

size_t lane_count () const

size_t swath_count () const

size_t tile_count () const

size_t total_tile_count () const

void set_data (const size_t lane_idx, const size_t loc, const ::uint32_t tile_id, const float value)

::uint32_t & tile_id (const size_t lane_idx, const size_t loc) INTEROP_THROW_SPEC((model

void set_saxis (const plot::axis &plot_axis)

void set_label (const std::string &label)

void set_subtitle (const std::string &subtitle)

void set_range (const float vmin, const float vmax)

void set_buffer (float data_buffer,::uint32_t id_buffer, const size_t lanes, const size_t swaths, const size_t tiles) INTEROP_THROW_SPEC((model

void resize (const size_t lanes, const size_t swaths, const size_t tiles)

void clear ()

Public Member Functions inherited from heatmap_data
heatmap_data ()

virtual ~heatmap_data ()

float at (const size_t row, const size_t col) const INTEROP_THROW_SPEC((model

float at (const size_t idx) const INTEROP_THROW_SPEC((model

float operator[] (const size_t idx) const INTEROP_THROW_SPEC((model

float operator() (const size_t row, const size_t col) const INTEROP_THROW_SPEC((model

float & operator() (const size_t row, const size_t col) INTEROP_THROW_SPEC((model

size_t row_count () const

size_t column_count () const

size_t length () const

bool empty () const

void set_buffer (float *data) INTEROP_THROW_SPEC((model

void set_buffer (float *data, const size_t rows, const size_t cols, const float default_val=std::numeric_limits< float >::quiet_NaN())

void resize (const size_t rows, const size_t cols, const float default_val=std::numeric_limits< float >::quiet_NaN())

void clear ()

size_t index_of (const size_t row, const size_t col) const

Public Member Functions inherited from chart_data
void set_axes (const axes &xyaxes)

void set_xaxis (const axis &xaxes)

void set_yaxis (const axis &yaxes)

void set_xlabel (const std::string &label)

void set_ylabel (const std::string &label)

void set_range (const float xmin, const float xmax, const float ymin, const float ymax)

void set_xrange (const float vmin, const float vmax)

void set_yrange (const float vmin, const float vmax)

void set_title (const std::string &title)

void clear ()

const axis & x_axis () const

const axis & y_axis () const

const std::string & title () const

const axes & xyaxes () const

Protected Member Functions
void set_buffer (::uint32_t *id_buffer)

void set_buffer (::uint32_t *id_buffer, const size_t swaths, const size_t tiles)

void resize (const size_t swaths, const size_t tiles)

Protected Attributes
::uint32_t * m_data

std::string m_subtitle

size_t m_swath_count

size_t m_tile_count

Friends
std::ostream & operator<< (std::ostream &out, const flowcell_data &data)

std::istream & operator>> (std::istream &in, flowcell_data &data)

Detailed Description

Encapsulates all data for a flowcell heat map

Constructor & Destructor Documentation

flowcell_data ( )

inline

Constructor

virtual ~flowcell_data ( )

inlinevirtual

Destructor

Member Function Documentation

void clear ( )

inline

Clear the data

void resize	(	const size_t	lanes,
		const size_t	swaths,
		const size_t	tiles
	)

inline

Resize the flowcell heat map to the given number of rows and columns

Parameters

lanes	number of lanes
swaths	number of swaths
tiles	number of tiles

void resize	(	const size_t	swaths,
		const size_t	tiles
	)

inlineprotected

Resize the tile ID map to the given number of rows and columns

Parameters

swaths	number of swaths
tiles	number of tiles

void set_buffer	(	float *	data_buffer,
		::uint32_t *	id_buffer,
		const size_t	lanes,
		const size_t	swaths,
		const size_t	tiles
	)

inline

Resize the heat map to the given number of rows and columns

Parameters

data_buffer	buffer to hold the flow cell values
id_buffer	buffer to hold the tile ids
lanes	number of lanes
swaths	number of swaths
tiles	number of tiles

void set_buffer ( ::uint32_t * id_buffer )

inlineprotected

Resize the heat map to the given number of rows and columns

Parameters

id_buffer buffer to hold the tile ids

void set_buffer	(	::uint32_t *	id_buffer,
		const size_t	swaths,
		const size_t	tiles
	)

inlineprotected

Resize the heat map to the given number of rows and columns

Parameters

id_buffer	buffer to hold the tile ids
swaths	number of swaths
tiles	number of tiles

void set_data	(	const size_t	lane_idx,
		const size_t	loc,
		const ::uint32_t	tile_id,
		const float	value
	)

inline

Set data at given location in the flowcell

Parameters

lane_idx	lane index
loc	physical tile location
tile_id	id of the tile
value	value of the metric

void set_label ( const std::string & label )

inline

Set the label of the axis

Parameters

label text label

void set_range	(	const float	vmin,
		const float	vmax
	)

inline

Set the limits of the axis

Parameters

vmin	minimum value
vmax	maximum value

void set_saxis ( const plot::axis & plot_axis )

inline

Set the axis

Parameters

plot_axis single axis

void set_subtitle ( const std::string & subtitle )

inline

Set the sub title

Parameters

subtitle label string

::uint32_t& tile_id	(	const size_t	lane_idx,
		const size_t	loc
	)

inline

Get the tile id associated with the location

Parameters

lane_idx
loc

Returns: tile id

Friends And Related Function Documentation

std::ostream& operator<<	(	std::ostream &	out,
		const flowcell_data &	data
	)

friend

std::istream& operator>>	(	std::istream &	in,
		flowcell_data &	data
	)

friend

Member Data Documentation

::uint32_t* m_data

protected

Array of tile numbers for each tile

std::string m_subtitle

protected

Sub title

size_t m_swath_count

protected

Number of swaths per lane

size_t m_tile_count

protected

Number of tiles per swath

The documentation for this class was generated from the following file:

/io/interop/model/plot/flowcell_data.h

Public Member Functions

Protected Member Functions

Protected Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation