#include <read_info.h>

Inheritance diagram for read_info:

Public Types
typedef size_t	number_t

Public Types inherited from cycle_range
typedef size_t	cycle_t

Public Member Functions
	read_info (const number_t number=0, const cycle_t first_cycle=0, const cycle_t last_cycle=0, const bool is_index=false, const bool is_reverse_complement=false)

number_t	number () const

bool	is_index () const

bool	is_reverse_complement () const

cycle_t	total_cycles () const

cycle_t	useable_cycles () const

Public Member Functions inherited from cycle_range
	cycle_range (const cycle_t first_cycle=std::numeric_limits< cycle_t >::max(), const cycle_t last_cycle=0)

cycle_t	first_cycle () const

cycle_t	last_cycle () const

void	first_cycle (const cycle_t val)

void	last_cycle (const cycle_t val)

bool	empty () const

void	update (const cycle_t cycle)

void	update (const cycle_range &rng)

Friends
class	info

template<class MetricType , int Version>
struct	io::generic_layout

Additional Inherited Members
Protected Attributes inherited from cycle_range
cycle_t	m_first_cycle

cycle_t	m_last_cycle

Detailed Description

Defines a range over cycles

Member Typedef Documentation

typedef size_t number_t

Define integral read number type

inline

Constructor

Parameters

number	read number identifier
first_cycle	index of first cycle
last_cycle	index of last cycle
is_index	true if the read is an index read

friend class info

friend

friend

The documentation for this class was generated from the following file: