#include <stat_summary.h>

Inheritance diagram for stat_summary:

Public Types
typedef metric_stat	metric_stat_t

Public Member Functions
	stat_summary (const size_t)

float	percent_gt_q30 () const

float	yield_g () const

float	projected_yield_g () const

uint64_t	reads () const

uint64_t	reads_pf () const

const metric_stat_t &	density () const

const metric_stat_t &	density_pf () const

const metric_stat_t &	cluster_count () const

const metric_stat_t &	cluster_count_pf () const

const metric_stat_t &	percent_pf () const

const metric_stat_t &	phasing () const

const metric_stat_t &	prephasing () const

const metric_stat_t &	percent_aligned () const

const metric_stat_t &	error_rate () const

const metric_stat_t &	error_rate_35 () const

const metric_stat_t &	error_rate_50 () const

const metric_stat_t &	error_rate_75 () const

const metric_stat_t &	error_rate_100 () const

const metric_stat_t &	first_cycle_intensity () const

const metric_stat_t &	phasing_slope () const

const metric_stat_t &	phasing_offset () const

const metric_stat_t &	prephasing_slope () const

const metric_stat_t &	prephasing_offset () const

const metric_stat_t &	percent_occupied () const

void	percent_gt_q30 (const float val)

void	yield_g (const float val)

void	projected_yield_g (const float val)

void	reads (const uint64_t val)

void	reads_pf (const uint64_t val)

void	density (const metric_stat_t &stat)

void	density_pf (const metric_stat_t &stat)

void	cluster_count (const metric_stat_t &stat)

void	cluster_count_pf (const metric_stat_t &stat)

void	percent_pf (const metric_stat_t &stat)

void	phasing (const metric_stat_t &stat)

void	prephasing (const metric_stat_t &stat)

void	percent_aligned (const metric_stat_t &stat)

void	error_rate (const metric_stat_t &stat)

void	error_rate_35 (const metric_stat_t &stat)

void	error_rate_50 (const metric_stat_t &stat)

void	error_rate_75 (const metric_stat_t &stat)

void	error_rate_100 (const metric_stat_t &stat)

void	first_cycle_intensity (const metric_stat_t &stat)

void	phasing_slope (const metric_stat_t &stat)

void	phasing_offset (const metric_stat_t &stat)

void	prephasing_slope (const metric_stat_t &stat)

void	prephasing_offset (const metric_stat_t &stat)

void	percent_occupied (const metric_stat_t &val)

void	resize_stat (const size_t)

Friends
template<class MetricType , int Version>
struct	io::generic_layout

Detailed Description

Summary statistics compiled by lane

Note: The reported standard deviation is always between tiles, not cycles. For metrics like error metrics, the mean over all cycles is used for each tile, before calculating the standard deviation.

Member Typedef Documentation

typedef metric_stat metric_stat_t

Collection of metric statistics type

Constructor & Destructor Documentation

stat_summary ( const size_t )

inline

Constructor

param channel_count number of channels

Member Function Documentation

void cluster_count ( const metric_stat_t & stat )

inline

Set statistics summarizing the cluster count of tiles in the lane

Parameters

stat	statistics summarizing the cluster count of tiles in the lane

void cluster_count_pf ( const metric_stat_t & stat )

inline

Set statistics summarizing the passing filter cluster count of tiles in the lane

Parameters

stat	statistics summarizing the passing filter cluster count of tiles in the lane

void density ( const metric_stat_t & stat )

inline

Set statistics summarizing the density of tiles in the lane

Parameters

stat	statistics summarizing the density of tiles in the lane

void density_pf ( const metric_stat_t & stat )

inline

Set statistics summarizing the passing filter density of tiles in the lane

Parameters

stat	statistics summarizing the passing filter density of tiles in the lane

void error_rate ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX error rate of tiles in the lane

Parameters

stat	statistics summarizing the PhiX error rate of tiles in the lane

void error_rate_100 ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane

Parameters

stat	statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane

void error_rate_35 ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX error rate over the first 35 cycles of tiles in the lane

Parameters

stat	statistics summarizing the PhiX error rate over the first 35 cycles of tiles in the lane

void error_rate_50 ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX error rate over the first 50 cycles of tiles in the lane

Parameters

stat	statistics summarizing the PhiX error rate over the first 50 cycles of tiles in the lane

void error_rate_75 ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX error rate over the first 75 cycles of tiles in the lane

Parameters

stat	statistics summarizing the PhiX error rate over the first 75 cycles of tiles in the lane

void first_cycle_intensity ( const metric_stat_t & stat )

inline

Set statistics summarizing the first cycle intensity of tiles in the lane

Parameters

stat	statistics summarizing the first cycle intensity of tiles in the lane

void percent_aligned ( const metric_stat_t & stat )

inline

Set statistics summarizing the PhiX percent aligned of tiles in the lane

Parameters

stat	statistics summarizing the PhiX percent aligned of tiles in the lane

void percent_gt_q30 ( const float val )

inline

Set the percent of bases greater than or equal to Q30

Parameters

val	percent of bases greater than or equal to Q30

void percent_occupied ( const metric_stat_t & val )

inline

Set mean summarizing the percent occupied

Parameters

val	statistics summarizing the percent occupied

void percent_pf ( const metric_stat_t & stat )

inline

Set statistics summarizing the percent of clusters passing filter of tiles in the lane

Parameters

stat	statistics summarizing the percent of clusters passing filter of tiles in the lane

void phasing ( const metric_stat_t & stat )

inline

Set statistics summarizing the phasing of tiles in the lane

Parameters

stat	statistics summarizing the phasing of tiles in the lane

void phasing_offset ( const metric_stat_t & stat )

inline

Set statistics summarizing the phasing offset

Parameters

stat	statistics summarizing the offset of the best fit line of phasing weight vs cycle

void phasing_slope ( const metric_stat_t & stat )

inline

Set statistics summarizing the phasing slope

Parameters

stat	statistics summarizing the slope of the best fit line of phasing weight vs cycle

void prephasing ( const metric_stat_t & stat )

inline

Set statistics summarizing the prephasing of tiles in the lane

Parameters

stat	statistics summarizing the prephasing of tiles in the lane

void prephasing_offset ( const metric_stat_t & stat )

inline

Set statistics summarizing the prephasing offset

Parameters

stat	statistics summarizing the offset of the best fit line of prephasing weight vs cycle

void prephasing_slope ( const metric_stat_t & stat )

inline

Set statistics summarizing the prephasing slope

Parameters

stat	statistics summarizing the slope of the best fit line of prephasing weight vs cycle

void projected_yield_g ( const float val )

inline

Set the projected yield of the run in gigabases

Parameters

val	projected yield of the run in gigabases

void reads ( const uint64_t val )

inline

Set the total number of clusters in the lane

Parameters

val	total number of clusters in the lane

void reads_pf ( const uint64_t val )

inline

Set the total number of clusters passing filter in the lane

Parameters

val	total number of clusters passing filter in the lane

void resize_stat ( const size_t )

inline

Resize the underlying data

void yield_g ( const float val )

inline

Set the yield of the run in gigabases

Parameters

val	yield of the run in gigabases

Friends And Related Function Documentation

friend struct io::generic_layout

friend

The documentation for this class was generated from the following file:

/io/interop/model/summary/stat_summary.h

Public Types

Public Member Functions

Friends

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation