File List

Here is a list of all files with brief descriptions:

[detail level 1234567]

▼ io
▼ interop
▼ constants
enum_description.h
enums.h
typedefs.h
▼ io
► format
abstract_metric_format.h
abstract_text_format.h
default_layout.h
generic_layout.h
map_io.h
metric_format.h
metric_format_factory.h
stream_membuf.h
stream_util.h
text_format.h
text_format_factory.h
► layout
base_metric.h
► plot
gnuplot.h
► table
csv_format.h
imaging_table_csv.h
metric_file_stream.h
metric_stream.h
paths.h
stream_exceptions.h
▼ logic
► metric
dynamic_phasing_metric.h
extended_tile_metric.h
extraction_metric.h
index_metric.h
metric_value.h
q_metric.h
tile_metric.h
► plot
plot_by_cycle.h
plot_by_lane.h
plot_data.h
plot_flowcell_map.h
plot_metric_list.h
plot_metric_proxy.h
plot_point.h
plot_qscore_heatmap.h
plot_qscore_histogram.h
plot_sample_qc.h
► summary
cycle_state_summary.h
error_summary.h
extraction_summary.h
index_summary.h
map_cycle_to_read.h
phasing_summary.h
quality_summary.h
run_summary.h
summary_statistics.h
tile_summary.h
► table
check_imaging_table_column.h
create_imaging_table.h
create_imaging_table_columns.h
table_populator.h
table_util.h
► utils
channel.h
enums.h
metric_type_ext.h
metrics_to_load.h
logic.h
▼ model
► metric_base
base_cycle_metric.h
base_metric.h
base_read_metric.h
metric_exceptions.h
metric_set.h
point2d.h
► metrics
corrected_intensity_metric.h
dynamic_phasing_metric.h
error_metric.h
extended_tile_metric.h
extraction_metric.h
image_metric.h
index_metric.h
phasing_metric.h
q_by_lane_metric.h
q_collapsed_metric.h
q_metric.h
summary_run_metric.h
tile_metric.h
► plot
axes.h
bar_point.h
candle_stick_point.h
chart_data.h
data_point.h
data_point_collection.h
filter_options.h
flowcell_data.h
heatmap_data.h
plot_data.h
plot_exceptions.h
series.h
► run
cycle_range.h
flowcell_layout.h
image_dimensions.h
info.h
parameters.h
read_info.h
run_exceptions.h
► summary
cycle_state_summary.h
index_count_summary.h
index_flowcell_summary.h
index_lane_summary.h
lane_summary.h
metric_average.h
metric_stat.h
metric_summary.h
read_summary.h
run_summary.h
stat_summary.h
surface_summary.h
► table
imaging_column.h
imaging_table.h
table_exceptions.h
model_exceptions.h
run_metrics.h
▼ util
assert.h
base_exception.h
constant_mapping.h
cstdint.h
exception.h
exception_specification.h
filesystem.h
indirect_range_iterator.h
length_of.h
lexical_cast.h
linear_hierarchy.h
map.h
math.h
object_list.h
option_parser.h
pstdint.h
self_registration.h
static_assert.h
statistics.h
string.h
time.h
timer.h
type_traits.h
unique_ptr.h
xml_exceptions.h
xml_parser.h
interop.h
▼ src
▼ apps
► inc
application.h
plot_options.h
aggregate.cpp
dumpbin.cpp
dumptext.cpp
imaging_table.cpp
index_summary.cpp
plot_by_cycle.cpp
plot_by_lane.cpp
plot_flowcell.cpp
plot_qscore_heatmap.cpp
plot_qscore_histogram.cpp
plot_sample_qc.cpp
summary.cpp
▼ examples
► csharp
Example1.cs
Example2.cs
Example3.cs
ImagingExample.cs
SummaryExample.cs
example1.cpp
example2.cpp
example3.cpp
example4.cpp
example_populate_qmetricset.cpp
example_q_metric.cpp
▼ ext
► python
core.py
▼ interop
► logic
► metric
dynamic_phasing_metric.cpp
extended_tile_metric.cpp
extraction_metric.cpp
index_metric.cpp
q_metric.cpp
► plot
plot_by_cycle.cpp
plot_by_lane.cpp
plot_flowcell_map.cpp
plot_metric_list.cpp
plot_qscore_heatmap.cpp
plot_qscore_histogram.cpp
plot_sample_qc.cpp
► summary
index_summary.cpp
run_summary.cpp
► table
create_imaging_table.cpp
create_imaging_table_columns.cpp
► utils
metrics_to_load.cpp
► model
► metrics
corrected_intensity_metric.cpp
dynamic_phasing_metric.cpp
error_metric.cpp
extended_tile_metric.cpp
extraction_metric.cpp
image_metric.cpp
index_metric.cpp
phasing_metric.cpp
q_collapsed_metric.cpp
q_metric.cpp
summary_run_metric.cpp
tile_metric.cpp
► run
info.cpp
parameters.cpp
► summary
index_summary.cpp
run_summary.cpp
run_metrics.cpp
run_metrics_helper.cpp
► util
filesystem.cpp
time.cpp
▼ tests
► csharp
► logic
DependencyTest.cs
ImagingTableLogic.cs
IndexSummaryLogic.cs
PlotDataByCycleTest.cs
PlotDataByLaneTest.cs
PlotFlowcellMap.cs
PlotQScoreHeatmap.cs
PlotQScoreHistogram.cs
PlotSampleQC.cs
► metrics
CorrectedIntensityMetricsTest.cs
ErrorMetricsTest.cs
ExtendedTileMetricsTest.cs
ExtractionMetricsTest.cs
ImageMetricsTest.cs
IndexMetricsTest.cs
PerformanceTest.cs
QMetricsTest.cs
RunMetricsTest.cs
TileMetricsTest.cs
► run
RunInfoTest.cs
RunParametersTest.cs
CoreTests.cs
TestSuite.cs
► interop
► inc
abstract_regression_test_generator.h
failure_listener.h
generic_fixture.h
persistent_parameter_generator.h
proxy_parameter_generator.h
regression_test_data.h
► io
csv_format.cpp
► logic
► inc
collapsed_q_plot_test_generator.h
empty_plot_test_generator.h
metric_filter_iterator.h
plot_regression_test_generator.h
channel_test.cpp
dynamic_phasing_logic_test.cpp
enum_parsing_test.cpp
imaging_table_logic_test.cpp
imaging_table_regression_test.cpp
index_summary_test.cpp
metric_type_ext_test.cpp
plot_bar_test.cpp
plot_candle_stick_test.cpp
plot_flowcell_test.cpp
plot_heatmap_test.cpp
plot_logic_test.cpp
summary_metrics_test.cpp
► metrics
► inc
corrected_intensity_metrics_test.h
error_metrics_test.h
extended_tile_metrics_test.h
extraction_metrics_test.h
format_registry.h
image_metrics_test.h
index_metrics_test.h
metric_format_fixtures.h
metric_generator.h
metric_test.h
phasing_metrics_test.h
q_collapsed_metrics_test.h
q_metrics_test.h
summary_run_metrics_test.h
tile_metrics_test.h
base_metric_tests.cpp
corrected_intensity_metrics_test.cpp
coverage_test.cpp
error_metrics_test.cpp
extended_tile_metrics_test.cpp
extraction_metrics_test.cpp
image_metrics_test.cpp
index_metrics_test.cpp
metric_regression_tests.cpp
metric_stream_error_test.cpp
metric_streams_test.cpp
phasing_metrics_test.cpp
q_by_lane_metric_test.cpp
q_collapsed_metrics_test.cpp
q_metrics_test.cpp
run_metric_test.cpp
summary_run_metrics_test.cpp
tile_metrics_test.cpp
► run
info_test.cpp
info_test.h
parameters_test.cpp
► util
option_parser_test.cpp
stat_test.cpp
unit_tests.cpp
► python
CoreTests.py
DepTests.py