illumina::interop::model::table Namespace Reference

Classes
class	imaging_column
class	imaging_table
struct	imaging_table_id_less

Enumerations
enum	column_id {   LaneColumn, TileColumn, CycleColumn, ReadColumn,   CycleWithinReadColumn, DensityKPermm2Column, DensityPfKPermm2Column, ClusterCountKColumn,   ClusterCountPfKColumn, PercentPassFilterColumn, PercentAlignedColumn, LegacyPhasingRateColumn,   LegacyPrephasingRateColumn, ErrorRateColumn, PercentGreaterThanQ20Column, PercentGreaterThanQ30Column,   P90Column, PercentNoCallsColumn, PercentBaseColumn, FwhmColumn,   CorrectedColumn, CalledColumn, SignalToNoiseColumn, PhasingWeightColumn,   PrephasingWeightColumn, PhasingSlopeColumn, PhasingOffsetColumn, PrephasingSlopeColumn,   PrephasingOffsetColumn, MinimumContrastColumn, MaximumContrastColumn, SurfaceColumn,   SwathColumn, SectionColumn, TileNumberColumn, ClusterCountOccupiedKColumn,   PercentOccupiedColumn, ImagingColumnCount, UnknownColumnId =INTEROP_UNKNOWN }

Functions
std::istream &	operator>> (std::istream &in, imaging_column &column)
std::ostream &	operator<< (std::ostream &out, const imaging_column &column)
std::istream &	operator>> (std::istream &in, imaging_table &table)
std::ostream &	operator<< (std::ostream &out, const imaging_table &table)
bool	operator== (const imaging_column &lhs, const imaging_column &rhs)

Enumeration Type Documentation

enum column_id

Map column index to name. Note, the enum has a 'Column' suffix added to the name above

Enumerator
LaneColumn
TileColumn
CycleColumn
ReadColumn
CycleWithinReadColumn
DensityKPermm2Column
DensityPfKPermm2Column
ClusterCountKColumn
ClusterCountPfKColumn
PercentPassFilterColumn
PercentAlignedColumn
LegacyPhasingRateColumn
LegacyPrephasingRateColumn
ErrorRateColumn
PercentGreaterThanQ20Column
PercentGreaterThanQ30Column
P90Column
PercentNoCallsColumn
PercentBaseColumn
FwhmColumn
CorrectedColumn
CalledColumn
SignalToNoiseColumn
PhasingWeightColumn
PrephasingWeightColumn
PhasingSlopeColumn
PhasingOffsetColumn
PrephasingSlopeColumn
PrephasingOffsetColumn
MinimumContrastColumn
MaximumContrastColumn
SurfaceColumn
SwathColumn
SectionColumn
TileNumberColumn
ClusterCountOccupiedKColumn
PercentOccupiedColumn
ImagingColumnCount
UnknownColumnId

Function Documentation

std::ostream& illumina::interop::model::table::operator<< ( std::ostream &  out, const imaging_column &  column  )

inline

Write a column header to an output stream

Parameters

out	output stream
column	column header

Returns

output stream

std::ostream& illumina::interop::model::table::operator<< ( std::ostream &  out, const imaging_table &  table  )

inline

Write the imaging table to the output stream in the CSV format

Parameters

out	output stream
table	imaging table

Returns

output stream

bool operator==	(	const imaging_column &	lhs,
		const imaging_column &	rhs
	)

Compare whether two imaging columns are equal

Parameters

lhs	an imaging column
rhs	an imaging column

Returns

true if the columns are equal

std::istream& illumina::interop::model::table::operator>> ( std::istream &  in, imaging_column &  column  )

inline

Read a column header from an input stream

Parameters

in	input stream
column	column header

Returns

input stream

std::istream& illumina::interop::model::table::operator>> ( std::istream &  in, imaging_table &  table  )

inline

Read an imaging table from an input stream in the CSV format

Parameters

in	input stream
table	imaging table

Returns

input stream