illumina::interop::unittest Namespace Reference

Classes
class	abstract_generator
class	abstract_regression_test_generator
class	argument_generator
class	argument_iterator
class	by_cycle_metric_generator
class	clear_metric_generator
class	collapsed_q_plot_test_generator
struct	corrected_intensity_metric_v2
struct	corrected_intensity_metric_v3
struct	corrected_intensity_metric_v4
class	empty_plot_test_generator
struct	error_metric_requirements
struct	error_metric_v3
struct	error_metric_v4
struct	error_metric_v5
struct	error_metric_v6
struct	extended_tile_metric_v1
struct	extended_tile_metric_v2
struct	extended_tile_metric_v3
struct	extraction_metric_v2
struct	extraction_metric_v3
class	failure_listener
class	format_registry
class	generator_ptr
struct	generic_test_fixture
class	hardcoded_metric_generator
struct	hiseq2500_run_info
struct	hiseq4k_run_info
struct	image_metric_v1
struct	image_metric_v2
struct	image_metric_v3
struct	index_metric_v1
struct	index_metric_v2
class	iterator_parameter_generator
class	metric_filter_iterator
class	metric_test
struct	miniseq_run_info
struct	miseq_run_info
struct	nextseq1k2k_run_info
struct	nextseq1k2k_run_info_large
struct	nextseq_550_run_info
struct	novaseq_run_info
struct	phasing_metric_v1
struct	phasing_metric_v2
class	plot_regression_test_generator
class	proxy_argument_generator
class	proxy_argument_iterator
struct	q_collapsed_metric_no_median_v2
struct	q_collapsed_metric_no_median_v3
struct	q_collapsed_metric_no_median_v4
struct	q_collapsed_metric_no_median_v5
struct	q_collapsed_metric_no_median_v5_6
struct	q_collapsed_metric_no_median_v6
struct	q_collapsed_metric_no_median_v_2_4
struct	q_collapsed_metric_v2
struct	q_collapsed_metric_v3
struct	q_collapsed_metric_v4
struct	q_collapsed_metric_v5
struct	q_collapsed_metric_v5_6
struct	q_collapsed_metric_v6
struct	q_collapsed_metric_v_2_4
struct	q_metric_requirements
struct	q_metric_v4
struct	q_metric_v5
struct	q_metric_v6
struct	q_metric_v6_unbinned
struct	q_metric_v7
struct	q_metric_v8
struct	q_metric_v9
struct	registry_factory
class	regression_test_data
class	regression_test_metric_generator
struct	sparse_value
class	standard_parameter_generator
struct	summary_run_v1
struct	tile_metric_v2
struct	tile_metric_v3
class	write_read_metric_generator

Typedefs
typedef ::testing::Types< corrected_intensity_metric_v2, corrected_intensity_metric_v3, corrected_intensity_metric_v4, error_metric_v3, error_metric_v4, error_metric_v5, error_metric_v6, extended_tile_metric_v1, extended_tile_metric_v2, extended_tile_metric_v3, extraction_metric_v2, extraction_metric_v3, image_metric_v1, image_metric_v2, image_metric_v3, index_metric_v1, index_metric_v2, phasing_metric_v1, phasing_metric_v2, q_collapsed_metric_v2, q_collapsed_metric_v3, q_collapsed_metric_v4, q_collapsed_metric_v5, q_collapsed_metric_v6, q_collapsed_metric_no_median_v2, q_collapsed_metric_no_median_v5, q_metric_v4, q_metric_v5, q_metric_v6, q_metric_v6_unbinned, q_metric_v7, q_metric_v8, q_metric_v9, tile_metric_v2, tile_metric_v3, summary_run_v1 >	PublicFormats
typedef registry_factory< hardcoded_metric_generator >	hardcoded_metric_registry_t
typedef registry_factory< write_read_metric_generator >	write_read_metric_registry_t
typedef registry_factory< by_cycle_metric_generator >	by_cycle_metric_registry_t
typedef registry_factory< clear_metric_generator >	clear_metric_registry_t

Functions
void	read_metrics_safe (model::metrics::run_metrics &metrics, const std::string &run_folder)
template<class T >
generator_ptr< T >	wrap (abstract_generator< T > *ptr)
bool	is_float_near (const float expected, const float actual, const float tol)
inline::testing::AssertionResult	AreFloatsNear (const float expected, const float actual, const float tol)
inline::testing::AssertionResult	AreValuesNear (const std::vector< float > &expected, const std::vector< float > &actual, const float tol)
template<typename T >
::testing::internal::ParamGenerator< T >	PersistentValuesIn (const std::vector< T > &values)
template<typename T , typename Proxy >
::testing::internal::ParamGenerator< typename T::parent_type >	ProxyValuesIn (T &object, const std::vector< Proxy > &values)

Typedef Documentation

typedef registry_factory<by_cycle_metric_generator> by_cycle_metric_registry_t

By cycle metric registry

typedef registry_factory<clear_metric_generator> clear_metric_registry_t

By cycle metric registry

typedef registry_factory<hardcoded_metric_generator> hardcoded_metric_registry_t

Hardcoded metric registry

typedef ::testing::Types< corrected_intensity_metric_v2, corrected_intensity_metric_v3, corrected_intensity_metric_v4, error_metric_v3, error_metric_v4, error_metric_v5, error_metric_v6, extended_tile_metric_v1, extended_tile_metric_v2, extended_tile_metric_v3, extraction_metric_v2, extraction_metric_v3, image_metric_v1, image_metric_v2, image_metric_v3, index_metric_v1, index_metric_v2, phasing_metric_v1, phasing_metric_v2, q_collapsed_metric_v2, q_collapsed_metric_v3, q_collapsed_metric_v4, q_collapsed_metric_v5, q_collapsed_metric_v6, q_collapsed_metric_no_median_v2, q_collapsed_metric_no_median_v5, q_metric_v4, q_metric_v5, q_metric_v6, q_metric_v6_unbinned, q_metric_v7, q_metric_v8, q_metric_v9, tile_metric_v2, tile_metric_v3, summary_run_v1 > PublicFormats

typedef registry_factory<write_read_metric_generator> write_read_metric_registry_t

Write-read metric registry

Function Documentation

inline ::testing::AssertionResult illumina::interop::unittest::AreFloatsNear	(	const float	expected,
		const float	actual,
		const float	tol
	)

Check if two floats are nearly the same. If both are NaN, then this check succeeds

Parameters

expected	expected float
actual	actual float
tol	tolerance

Returns

true if both numbers hold the same value, or their difference is less than tolerance

inline ::testing::AssertionResult illumina::interop::unittest::AreValuesNear	(	const std::vector< float > &	expected,
		const std::vector< float > &	actual,
		const float	tol
	)

Check if two float arrays are nearly the same. If both are NaN, then this check succeeds

Parameters

expected	expected vector of floats
actual	actual vector of floats
tol	tolerance

Returns

true if both numbers hold the same value, or their difference is less than tolerance

bool illumina::interop::unittest::is_float_near ( const float  expected, const float  actual, const float  tol  )

inline

Test if two floats are nearly the same If both are NaN, then this check succeeds

Parameters

expected	expected float
actual	actual float
tol	tolerance

Returns

rue if both numbers hold the same value, or their difference is less than tolerance

::testing::internal::ParamGenerator<T> illumina::interop::unittest::PersistentValuesIn

(

const std::vector< T > &

values

)

Generate parameters from a persistent vector (cannot be on the stack!)

Note

This code may only work with gtest 1.7.0

Parameters

values

list of values

Returns

parameter generator

::testing::internal::ParamGenerator< typename T::parent_type > illumina::interop::unittest::ProxyValuesIn	(	T &	object,
		const std::vector< Proxy > &	values
	)

Generate parameters from a persistent vector (cannot be on the stack!)

Note

This code may only work with gtest 1.7.0

Parameters

object	object that acts like a functor
values	list of values

Returns

parameter generator

void illumina::interop::unittest::read_metrics_safe ( model::metrics::run_metrics &  metrics, const std::string &  run_folder  )

inline

Read run metrics safely from the disk

Parameters

metrics	run_metrics object
run_folder	path to the run folder

generator_ptr<T> illumina::interop::unittest::wrap

(

abstract_generator< T > *

ptr

)

Wrap the pointer in a smart pointer

Parameters

ptr	source pointer to wrap

Returns

smart pointer