Classes
class	abstract_generator

class	abstract_regression_test_generator

class	argument_generator

class	argument_iterator

class	by_cycle_metric_generator

class	clear_metric_generator

class	collapsed_q_plot_test_generator

struct	corrected_intensity_metric_v2

struct	corrected_intensity_metric_v3

struct	corrected_intensity_metric_v4

class	empty_plot_test_generator

struct	error_metric_requirements

struct	error_metric_v3

struct	error_metric_v4

struct	error_metric_v5

struct	error_metric_v6

struct	extended_tile_metric_v1

struct	extended_tile_metric_v2

struct	extended_tile_metric_v3

struct	extraction_metric_v2

struct	extraction_metric_v3

class	failure_listener

class	format_registry

class	generator_ptr

struct	generic_test_fixture

class	hardcoded_metric_generator

struct	hiseq2500_run_info

struct	hiseq4k_run_info

struct	image_metric_v1

struct	image_metric_v2

struct	image_metric_v3

struct	index_metric_v1

struct	index_metric_v2

class	iterator_parameter_generator

class	metric_filter_iterator

class	metric_test

struct	miniseq_run_info

struct	miseq_run_info

struct	nextseq1k2k_run_info

struct	nextseq1k2k_run_info_large

struct	nextseq_550_run_info

struct	novaseq_run_info

struct	phasing_metric_v1

struct	phasing_metric_v2

class	plot_regression_test_generator

class	proxy_argument_generator

class	proxy_argument_iterator

struct	q_collapsed_metric_no_median_v2

struct	q_collapsed_metric_no_median_v3

struct	q_collapsed_metric_no_median_v4

struct	q_collapsed_metric_no_median_v5

struct	q_collapsed_metric_no_median_v5_6

struct	q_collapsed_metric_no_median_v6

struct	q_collapsed_metric_no_median_v_2_4

struct	q_collapsed_metric_v2

struct	q_collapsed_metric_v3

struct	q_collapsed_metric_v4

struct	q_collapsed_metric_v5

struct	q_collapsed_metric_v5_6

struct	q_collapsed_metric_v6

struct	q_collapsed_metric_v_2_4

struct	q_metric_requirements

struct	q_metric_v4

struct	q_metric_v5

struct	q_metric_v6

struct	q_metric_v6_unbinned

struct	q_metric_v7

struct	registry_factory

class	regression_test_data

class	regression_test_metric_generator

struct	sparse_value

class	standard_parameter_generator

struct	summary_run_v1

struct	tile_metric_v2

struct	tile_metric_v3

class	write_read_metric_generator

Typedefs
typedef ::testing::Types< corrected_intensity_metric_v2, corrected_intensity_metric_v3, corrected_intensity_metric_v4, error_metric_v3, error_metric_v4, error_metric_v5, error_metric_v6, extended_tile_metric_v1, extended_tile_metric_v2, extended_tile_metric_v3, extraction_metric_v2, extraction_metric_v3, image_metric_v1, image_metric_v2, image_metric_v3, index_metric_v1, index_metric_v2, phasing_metric_v1, phasing_metric_v2, q_collapsed_metric_v2, q_collapsed_metric_v3, q_collapsed_metric_v4, q_collapsed_metric_v5, q_collapsed_metric_v6, q_collapsed_metric_no_median_v2, q_collapsed_metric_no_median_v5, q_metric_v4, q_metric_v5, q_metric_v6, q_metric_v6_unbinned, q_metric_v7, tile_metric_v2, tile_metric_v3, summary_run_v1 >	PublicFormats

typedef registry_factory< hardcoded_metric_generator >	hardcoded_metric_registry_t

typedef registry_factory< write_read_metric_generator >	write_read_metric_registry_t

typedef registry_factory< by_cycle_metric_generator >	by_cycle_metric_registry_t

typedef registry_factory< clear_metric_generator >	clear_metric_registry_t

Functions
void	read_metrics_safe (model::metrics::run_metrics &metrics, const std::string &run_folder)

template<class T >
generator_ptr< T >	wrap (abstract_generator< T > *ptr)

bool	is_float_near (const float expected, const float actual, const float tol)

inline::testing::AssertionResult	AreFloatsNear (const float expected, const float actual, const float tol)

inline::testing::AssertionResult	AreValuesNear (const std::vector< float > &expected, const std::vector< float > &actual, const float tol)

template<typename T >
::testing::internal::ParamGenerator< T >	PersistentValuesIn (const std::vector< T > &values)

template<typename T , typename Proxy >
::testing::internal::ParamGenerator< typename T::parent_type >	ProxyValuesIn (T &object, const std::vector< Proxy > &values)

Typedef Documentation

typedef registry_factory<by_cycle_metric_generator> by_cycle_metric_registry_t

By cycle metric registry

typedef registry_factory<clear_metric_generator> clear_metric_registry_t

By cycle metric registry

typedef registry_factory<hardcoded_metric_generator> hardcoded_metric_registry_t

Hardcoded metric registry

typedef registry_factory<write_read_metric_generator> write_read_metric_registry_t

Write-read metric registry

Function Documentation

inline ::testing::AssertionResult illumina::interop::unittest::AreFloatsNear	(	const float	expected,
		const float	actual,
		const float	tol
	)

Check if two floats are nearly the same. If both are NaN, then this check succeeds

Parameters

expected	expected float
actual	actual float
tol	tolerance

Returns: true if both numbers hold the same value, or their difference is less than tolerance

inline ::testing::AssertionResult illumina::interop::unittest::AreValuesNear	(	const std::vector< float > &	expected,
		const std::vector< float > &	actual,
		const float	tol
	)

Check if two float arrays are nearly the same. If both are NaN, then this check succeeds

Parameters

expected	expected vector of floats
actual	actual vector of floats
tol	tolerance

Returns: true if both numbers hold the same value, or their difference is less than tolerance

bool illumina::interop::unittest::is_float_near	(	const float	expected,
		const float	actual,
		const float	tol
	)

inline

Test if two floats are nearly the same If both are NaN, then this check succeeds

Parameters

expected	expected float
actual	actual float
tol	tolerance

Returns: rue if both numbers hold the same value, or their difference is less than tolerance

::testing::internal::ParamGenerator<T> illumina::interop::unittest::PersistentValuesIn ( const std::vector< T > & values )

Generate parameters from a persistent vector (cannot be on the stack!)

Note: This code may only work with gtest 1.7.0

Parameters

values list of values

Returns: parameter generator

::testing::internal::ParamGenerator< typename T::parent_type > illumina::interop::unittest::ProxyValuesIn	(	T &	object,
		const std::vector< Proxy > &	values
	)

Generate parameters from a persistent vector (cannot be on the stack!)

Note: This code may only work with gtest 1.7.0

Parameters

object	object that acts like a functor
values	list of values

Returns: parameter generator

void illumina::interop::unittest::read_metrics_safe	(	model::metrics::run_metrics &	metrics,
		const std::string &	run_folder
	)

inline

Read run metrics safely from the disk

Parameters

metrics	run_metrics object
run_folder	path to the run folder

generator_ptr<T> illumina::interop::unittest::wrap ( abstract_generator< T > * ptr )

Wrap the pointer in a smart pointer

Parameters

ptr	source pointer to wrap

Returns: smart pointer

Classes

Typedefs

Functions

Typedef Documentation

Function Documentation