qval_cache Class Reference

#include <quality_summary.h>

Public Member Functions
	qval_cache (const model::summary::run_summary &run, const size_t surface_count=1)
void	add (const model::metrics::q_collapsed_metric &metric, const size_t read_number, const size_t lane, const size_t surface=0)
const qval_total &	total_for (const size_t read_number, const size_t lane, const size_t surface=0) const
size_t	metric_count (const size_t read_number, const size_t lane, const size_t surface=0) const
size_t	tile_count (const size_t lane, const size_t surface=0) const

Detailed Description

Cache the q-value by read/lane or read/lane/surface

Constructor & Destructor Documentation

qval_cache ( const model::summary::run_summary &  run, const size_t  surface_count = 1  )

inline

Constructor

Parameters

run	run summary
surface_count	number of surfaces

Member Function Documentation

void add ( const model::metrics::q_collapsed_metric &  metric, const size_t  read_number, const size_t  lane, const size_t  surface = 0  )

inline

Accumulate a metric into the cache

Parameters

metric	collapsed q-metric
read_number	index of the read
lane	index of the lane
surface	surface index

size_t metric_count ( const size_t  read_number, const size_t  lane, const size_t  surface = 0  ) const

inline

Get number of metrics in read/lane/surface

Parameters

read_number	read index
lane	lane index
surface	surface index

Returns

number of metrics

size_t tile_count ( const size_t  lane, const size_t  surface = 0  ) const

inline

Get number of tiles for lane/surface

Parameters

lane	lane index
surface	surface index

Returns

number of tiles

const qval_total& total_for ( const size_t  read_number, const size_t  lane, const size_t  surface = 0  ) const

inline

Get qval_total struct for given read/lane/surface

Parameters

read_number	read index
lane	lane index
surface	surface index

Returns

qval_total struct

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The documentation for this class was generated from the following file:

• /io/interop/logic/summary/quality_summary.h