- c -

• calculate_metric_set_buffer_size() : calculate_metric_set_buffer_size
• called_counts() : corrected_intensity_metric
• called_counts_array() : corrected_intensity_metric
• called_cycle_range() : cycle_state_summary
• calledCounts() : corrected_intensity_metric
• candle_stick_point() : candle_stick_point
• candle_stick_read_generator() : candle_stick_read_generator
• cast() : lexical_cast_helper< char *, Destination > , lexical_cast_helper< char *, std::string > , lexical_cast_helper< const char *, Destination > , lexical_cast_helper< const char *, std::string > , lexical_cast_helper< Source, std::string > , lexical_cast_helper< std::string, const char * > , lexical_cast_helper< std::string, Destination > , lexical_cast_helper< std::string, std::string >
• chain_range_iterator() : chain_range_iterator
• channel() : filter_options
• channel_count() : extraction_metric , extraction_metric_header , image_metric , image_metric_header , run_summary
• channel_description() : filter_options
• channelCount() : image_metric , image_metric_header
• channels() : info
• check_for_data_sources() : run_metrics
• check_for_each_data_source() : check_for_each_data_source
• check_for_unknown_options() : option_parser
• check_if_group_is_empty() : check_if_group_is_empty
• check_if_groupid_is_empty() : check_if_groupid_is_empty
• clear() : summary_by_lane_read< T > , base_cycle_metric_header , base_metric_header , base_read_metric_header , metric_set< T > , error_metric_header , extraction_metric_header , image_metric_header , index_metric_header , q_collapsed_header , q_score_header , run_metrics , tile_metric_header , axes , axis , chart_data , flowcell_data , heatmap_data , plot_data< Point > , index_flowcell_summary , index_lane_summary , metric_stat , run_summary , imaging_table
• clear_lookup() : metric_set< T >
• clear_metric_generator() : clear_metric_generator< Gen >
• ClearTest() : PlotDataByCycleTest
• clone() : abstract_generator< T > , abstract_regression_test_generator< Model >
• Clone() : argument_iterator< T >
• clone() : by_cycle_metric_generator< Gen > , clear_metric_generator< Gen > , collapsed_q_plot_test_generator< PlotData > , empty_plot_test_generator< PlotData > , hardcoded_metric_generator< Gen > , plot_regression_test_generator< PlotData >
• Clone() : proxy_argument_iterator< T, Proxy >
• clone() : regression_test_metric_generator< MetricSet > , standard_parameter_generator< T, Fixture > , write_read_metric_generator< Gen > , imaging_table_regression_test , index_summary_generator< IndexGen, TileGen > , regression_test_index_summary_generator , regression_test_metric_generator , regression_test_summary_generator< Logic > , run_summary_generator< Gen, SummaryLogic > , write_metric_generator< Gen >
• cluster_count() : index_info , index_metric , tile_metric , index_count_summary , metric_summary , stat_summary
• cluster_count_k() : tile_metric
• cluster_count_m() : tile_metric
• cluster_count_occupied() : extended_tile_metric
• cluster_count_occupied_k() : extended_tile_metric
• cluster_count_pf() : index_metric , tile_metric , metric_summary , stat_summary
• cluster_count_pf_k() : tile_metric
• cluster_count_pf_m() : tile_metric
• cluster_density() : tile_metric
• cluster_density_k() : tile_metric
• cluster_density_pf() : tile_metric
• cluster_density_pf_k() : tile_metric
• clusterCount() : tile_metric
• clusterCountPf() : tile_metric
• clusterDensity() : tile_metric
• clusterDensityPf() : tile_metric
• collapsed_q_plot_test_generator() : collapsed_q_plot_test_generator< PlotData >
• color() : series< Point >
• column_at() : imaging_table
• column_count() : heatmap_data , imaging_column , imaging_table
• columns() : imaging_table
• CompareRunInfo() : AbstractRunInfoTest , AbstractRunParametersTest
• compress() : q_metric
• compute_buffer_size() : generic_layout< image_metric, 1 > , generic_layout< index_metric, 1 > , generic_layout< index_metric, 2 > , generic_layout< tile_metric, 2 > , generic_layout< tile_metric, 3 >
• compute_header_size() : generic_layout< corrected_intensity_metric, 2 > , generic_layout< corrected_intensity_metric, 3 > , generic_layout< corrected_intensity_metric, 4 > , generic_layout< dynamic_phasing_metric, 1 > , generic_layout< error_metric, 3 > , generic_layout< error_metric, 4 > , generic_layout< error_metric, 5 > , generic_layout< error_metric, 6 > , generic_layout< extended_tile_metric, 1 > , generic_layout< extended_tile_metric, 2 > , generic_layout< extended_tile_metric, 3 > , generic_layout< extraction_metric, 2 > , generic_layout< extraction_metric, 3 > , generic_layout< image_metric, 1 > , generic_layout< image_metric, 2 > , generic_layout< image_metric, 3 > , generic_layout< index_metric, 1 > , generic_layout< index_metric, 2 > , generic_layout< phasing_metric, 1 > , generic_layout< phasing_metric, 2 > , generic_layout< q_collapsed_metric, 2 > , generic_layout< q_collapsed_metric, 5 > , generic_layout< q_metric, 4 > , generic_layout< q_metric, 5 > , generic_layout< q_metric, 6 > , generic_layout< q_metric, 7 > , generic_layout< summary_run_metric, 1 > , generic_layout< tile_metric, 2 > , generic_layout< tile_metric, 3 >
• compute_size() : generic_layout< corrected_intensity_metric, 2 > , generic_layout< corrected_intensity_metric, 3 > , generic_layout< corrected_intensity_metric, 4 > , generic_layout< dynamic_phasing_metric, 1 > , generic_layout< error_metric, 3 > , generic_layout< error_metric, 4 > , generic_layout< error_metric, 5 > , generic_layout< error_metric, 6 > , generic_layout< extended_tile_metric, 1 > , generic_layout< extended_tile_metric, 2 > , generic_layout< extended_tile_metric, 3 > , generic_layout< extraction_metric, 2 > , generic_layout< extraction_metric, 3 > , generic_layout< image_metric, 1 > , generic_layout< image_metric, 2 > , generic_layout< image_metric, 3 > , generic_layout< index_metric, 1 > , generic_layout< index_metric, 2 > , generic_layout< phasing_metric, 1 > , generic_layout< phasing_metric, 2 > , generic_layout< q_collapsed_metric, 2 > , generic_layout< q_collapsed_metric, 5 > , generic_layout< q_metric, 4 > , generic_layout< q_metric, 5 > , generic_layout< q_metric, 6 > , generic_layout< q_metric, 7 > , generic_layout< summary_run_metric, 1 > , generic_layout< tile_metric, 2 > , generic_layout< tile_metric, 3 >
• const_member_function_less_w() : const_member_function_less_w< T, R, P1 >
• const_member_function_w() : const_member_function_w< T, R, P1 > , const_member_function_w< T, R, parameter_none_type >
• copy_by_tile() : metric_set< T >
• copy_reads() : run_summary
• copy_tile() : run_metrics
• corrected_int_all() : corrected_intensity_metric
• corrected_int_all_array() : corrected_intensity_metric
• corrected_int_all_float() : corrected_intensity_metric
• corrected_int_called() : corrected_intensity_metric
• corrected_int_called_array() : corrected_intensity_metric
• corrected_intensity_metric() : corrected_intensity_metric
• correctedIntAll() : corrected_intensity_metric
• correctedIntCalled() : corrected_intensity_metric
• count_legacy_bins() : run_metrics
• create_binary_data() : corrected_intensity_metric_v2 , corrected_intensity_metric_v3 , corrected_intensity_metric_v4 , error_metric_v3 , error_metric_v4 , error_metric_v5 , error_metric_v6 , extended_tile_metric_v1 , extended_tile_metric_v2 , extended_tile_metric_v3 , extraction_metric_v2 , extraction_metric_v3 , image_metric_v1 , image_metric_v2 , image_metric_v3 , index_metric_v1 , index_metric_v2 , phasing_metric_v1 , phasing_metric_v2 , q_collapsed_metric_no_median_v5_6< Version > , q_collapsed_metric_no_median_v_2_4< Version > , q_collapsed_metric_v5_6< Version > , q_collapsed_metric_v_2_4< Version > , q_metric_v4 , q_metric_v5 , q_metric_v6 , q_metric_v6_unbinned , q_metric_v7 , summary_run_v1 , tile_metric_v2 , tile_metric_v3
• create_expected() : corrected_intensity_metric_v2 , corrected_intensity_metric_v3 , corrected_intensity_metric_v4 , error_metric_requirements , error_metric_v3 , error_metric_v4 , error_metric_v5 , error_metric_v6 , extended_tile_metric_v1 , extended_tile_metric_v2 , extended_tile_metric_v3 , extraction_metric_v2 , extraction_metric_v3 , hiseq2500_run_info , hiseq4k_run_info , image_metric_v1 , image_metric_v2 , image_metric_v3 , index_metric_v1 , index_metric_v2 , miniseq_run_info , miseq_run_info , nextseq1k2k_run_info , nextseq1k2k_run_info_large , nextseq_550_run_info , novaseq_run_info , phasing_metric_v1 , phasing_metric_v2 , q_collapsed_metric_no_median_v5_6< Version > , q_collapsed_metric_no_median_v_2_4< Version > , q_collapsed_metric_v5_6< Version > , q_collapsed_metric_v_2_4< Version > , q_metric_requirements , q_metric_v4 , q_metric_v5 , q_metric_v6 , q_metric_v6_unbinned , q_metric_v7 , summary_run_v1 , tile_metric_v2 , tile_metric_v3
• create_id() : base_cycle_metric , base_metric , base_read_metric , empty_metric
• create_string() : hiseq2500_run_info , hiseq4k_run_info , miniseq_run_info , miseq_run_info , nextseq1k2k_run_info , nextseq1k2k_run_info_large , nextseq_550_run_info , novaseq_run_info
• create_summary() : corrected_intensity_metric_v2 , corrected_intensity_metric_v3 , error_metric_requirements , error_metric_v3 , extended_tile_metric_v1 , extraction_metric_v2 , index_metric_v1 , phasing_metric_v1 , q_metric_requirements , q_metric_v4 , q_metric_v5 , q_metric_v6 , tile_metric_v2
• csharp_date_time() : csharp_date_time
• cumulative_percent_over_q20() : q_collapsed_metric
• cumulative_percent_over_q30() : q_collapsed_metric
• cumulative_q20() : q_collapsed_metric
• cumulative_q30() : q_collapsed_metric
• cumulative_total() : q_collapsed_metric
• Current() : argument_iterator< T > , proxy_argument_iterator< T, Proxy >
• cycle() : base_cycle_metric , filter_options
• cycle_description() : filter_options
• cycle_from_id() : base_cycle_metric
• cycle_hash() : base_cycle_metric
• cycle_range() : cycle_range
• cycle_state() : lane_summary , run_summary
• cycle_state_summary() : cycle_state_summary
• cycle_within_read() : info
• cycles() : metric_set< T >