Collapsed Q metrics

Functions

uint_t q20 () const
 
uint_t q30 () const
 
uint_t total () const
 
uint_t median_qscore () const
 
float median_qscore_flt () const
 
ulong_t cumulative_q20 () const
 
ulong_t cumulative_q30 () const
 
ulong_t cumulative_total () const
 
float percent_over_q20 () const
 
float percent_over_q30 () const
 
float cumulative_percent_over_q20 () const
 
float cumulative_percent_over_q30 () const
 

Detailed Description

Summary of q-metrics for each cycle

See full class description

Function Documentation

float cumulative_percent_over_q20 ( ) const
inline

Percent >= Q20 accumulated up to the current cycle

Returns
% >= Q20 accumulated up to the current cycle
float cumulative_percent_over_q30 ( ) const
inline

Percent >= Q30 accumulated up to the current cycle

Returns
% >= Q30 accumulated up to the current cycle
ulong_t cumulative_q20 ( ) const
inline

Cumulative number of Q20 clusters over all cycles up to the current cycle

Returns
number of q20 clusters cumulative over cycles
ulong_t cumulative_q30 ( ) const
inline

Cumulative number of Q30 clusters over all cycles up to the current cycle

Returns
number of q30 clusters cumulative over cycles
ulong_t cumulative_total ( ) const
inline

Cumulative total clusters over all cycles up to the current cycle

Returns
total clusters cumulative over cycles
uint_t median_qscore ( ) const
inline

Median q-score for tile

Returns
median q-score
float median_qscore_flt ( ) const
inline

Median q-score for tile

Returns
median q-score as a float
float percent_over_q20 ( ) const
inline

Percent >= Q20

Returns
% >= Q20
float percent_over_q30 ( ) const
inline

Percent >= Q30

Returns
% >= Q30
uint_t q20 ( ) const
inline

Number of Q20 clusters

Returns
number of q20 clusters
uint_t q30 ( ) const
inline

Number of Q30 clusters

Returns
number of q30 clusters
uint_t total ( ) const
inline

Total number of q-scored clusters

Returns
total number of q-scored clusters