Functions

size_t id () const
 
const std::string & index1 () const
 
const std::string & index2 () const
 
float fraction_mapped () const
 
::uint64_t cluster_count () const
 
const std::string & sample_id () const
 
const std::string & project_name () const
 

Detailed Description

Information used in the SAV Indexing Tab

See full class description

Function Documentation

::uint64_t cluster_count ( ) const
inline

Number of clusters that have this index sequence

Returns
cluster count
float fraction_mapped ( ) const
inline

Fraction of reads mapped

% Reads Identified (PF) in SAV

Returns
fraction of reads mapped
size_t id ( ) const
inline

Get the index unique identifier (based on a counter)

Index Number in SAV

Returns
index identifier
const std::string& index1 ( ) const
inline

Index sequence 1

Index 1 (I7) in SAV

Returns
index sequence
const std::string& index2 ( ) const
inline

Index sequence 2

Index 2 (I5) in SAV

Returns
index sequence
const std::string& project_name ( ) const
inline

Project name

Returns
project name
const std::string& sample_id ( ) const
inline

Sample id

Sample Id in SAV

Returns
sample id