Index Count Summary

Functions
size_t	id () const
const std::string &	index1 () const
const std::string &	index2 () const
float	fraction_mapped () const
::uint64_t	cluster_count () const
const std::string &	sample_id () const
const std::string &	project_name () const

Detailed Description

Information used in the SAV Indexing Tab

See full class description

Function Documentation

::uint64_t cluster_count ( ) const

inline

Number of clusters that have this index sequence

Returns

cluster count

float fraction_mapped ( ) const

inline

Fraction of reads mapped

% Reads Identified (PF) in SAV

Returns

fraction of reads mapped

size_t id ( ) const

inline

Get the index unique identifier (based on a counter)

Index Number in SAV

Returns

index identifier

const std::string& index1 ( ) const

inline

Index sequence 1

Index 1 (I7) in SAV

Returns

index sequence

const std::string& index2 ( ) const

inline

Index sequence 2

Index 2 (I5) in SAV

Returns

index sequence

const std::string& project_name ( ) const

inline

Project name

Returns

project name

const std::string& sample_id ( ) const

inline

Sample id

Sample Id in SAV

Returns

sample id