Per tile tile metrics:
- Clusters passing filter
- Density passing filter
- Phasing per read
- Prephasing per read
- Percent aligned per read
See full class description
See read metrics
- Note
- All metrics in this class are supported by all versions
| float cluster_count |
( |
| ) |
const |
|
inline |
Number of clusters for each tile
- Returns
- number of clusters
| float cluster_count_k |
( |
| ) |
const |
|
inline |
Number of kilo-clusters for each tile
- Returns
- number of kilo-clusters
| float cluster_count_m |
( |
| ) |
const |
|
inline |
Number of mega-clusters for each tile
- Returns
- number of mega-clusters
| float cluster_count_pf |
( |
| ) |
const |
|
inline |
Number of clusters passing filter for each tile
- Returns
- number of clusters passing filter
| float cluster_count_pf_k |
( |
| ) |
const |
|
inline |
Number of kilo-clusters passing filter for each tile
- Returns
- number of kilo-clusters passing filter
| float cluster_count_pf_m |
( |
| ) |
const |
|
inline |
Number of mega-clusters passing filter for each tile
- Returns
- number of mega-clusters passing filter
| float cluster_density |
( |
| ) |
const |
|
inline |
Density of clusters for each tile (in clusters per mm2)
- Returns
- cluster density
| float cluster_density_k |
( |
| ) |
const |
|
inline |
Density of clusters for each tile (in kilo-clusters per mm2)
- Returns
- cluster density in kilo-clusters per mm2
| float cluster_density_pf |
( |
| ) |
const |
|
inline |
Density of clusters passing filter for each tile (in clusters per mm2)
- Returns
- cluster density passing filter
| float cluster_density_pf_k |
( |
| ) |
const |
|
inline |
Density of clusters passing filter for each tile (in kilo-clusters per mm2)
- Returns
- cluster density passing filter (in kilo-clusters per mm2)
| bool is_dead_tile |
( |
| ) |
const |
|
inline |
Determine if the tile has no raw or PF clusters
- Returns
- true if the tile has no raw or PF clusters
| float percent_aligned |
( |
const size_t |
n | ) |
const |
|
inline |
Percent aligned for read at specified index
- Note
- If percent aligned was never estimated, then it will be NaN
- Parameters
-
- Returns
- percent aligned (or NaN is out of bounds)
| float percent_aligned_at |
( |
const size_t |
number | ) |
const |
|
inline |
Percent aligned for read read number
- Note
- If percent aligned was never estimated, then it will be NaN
- Parameters
-
- Returns
- percent aligned (or NaN is out of bounds)
| float percent_pf |
( |
| ) |
const |
|
inline |
Percent of clusters passing filter
- Returns
- percent of clusters passing filter
| float percent_phasing |
( |
const size_t |
n | ) |
const |
|
inline |
Percent phasing for read at specified index
- Note
- Supported only in version 2
- Parameters
-
- Returns
- percent phasing (or NaN is out of bounds)
| float percent_phasing_at |
( |
const size_t |
number | ) |
const |
|
inline |
Percent phasing for read read number
- Note
- Supported only in version 2
- Parameters
-
- Returns
- percent phasing (or NaN is out of bounds)
| float percent_prephasing |
( |
const size_t |
n | ) |
const |
|
inline |
Percent prephasing for read at specified index
- Note
- Supported only in version 2
- Parameters
-
- Returns
- percent prephasing (or NaN is out of bounds)
| float percent_prephasing_at |
( |
const size_t |
number | ) |
const |
|
inline |
Percent prephasing for read number
- Note
- Supported only in version 2
- Parameters
-
- Returns
- percent prephasing (or NaN is out of bounds)
| size_t read_count |
( |
| ) |
const |
|
inline |
Number of reads
- Returns
- number of reads
| const read_metric_vector& read_metrics |
( |
| ) |
const |
|
inline |
Metrics for each read on the tile
- Returns
- vector of metrics for each read