Summary of key metrics
See full class description
| double cluster_count |
( |
| ) |
const |
|
inline |
Get the cluster count
- Returns
- cluster count
| double cluster_count_pf |
( |
| ) |
const |
|
inline |
Get the cluster count PF
- Returns
- cluster count PF
| float error_rate |
( |
| ) |
const |
|
inline |
Get the error rate of PHIX for the run over all "usable cycles".
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- error rate of PHIX for run over all "usable cycles".
| float first_cycle_intensity |
( |
| ) |
const |
|
inline |
Get the first cycle intensity
- Returns
- first cycle intensity
| float percent_aligned |
( |
| ) |
const |
|
inline |
Get the percent aligned PHIX for the run
- Returns
- percent aligned PHIX
| float percent_gt_q30 |
( |
| ) |
const |
|
inline |
Get the percent of bases greater than or equal to Q30 over all "usable cycles"
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- percent of bases greater than or equal to Q30 over all "usable cycles"
| float percent_occupancy_proxy |
( |
| ) |
const |
|
inline |
Get the percent occupancy proxy
Also known as % loading concentration
- Returns
- percent occupancy proxy
| float percent_occupied |
( |
| ) |
const |
|
inline |
Get the percent occupied
- Returns
- percent occupied
| float projected_yield_g |
( |
| ) |
const |
|
inline |
Get the projected yield of the run in gigabases over all "usable cycles"
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- projected yield of the run in gigabases over all "usable cycles"
Get the reads PF value for run
- Returns
- reads PF val for run
| uint64_t reads_pf |
( |
| ) |
const |
|
inline |
Get the reads PF value for run
- Returns
- reads PF val for run
Get the yield of the run in gigabases over all "usable cycles"
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- yield of the run in gigabases over all "usable cycles"