Metric summary

Functions

float error_rate () const
 
float percent_aligned () const
 
float first_cycle_intensity () const
 
float percent_gt_q30 () const
 
float yield_g () const
 
float projected_yield_g () const
 
float percent_occupied () const
 
float percent_occupancy_proxy () const
 

Detailed Description

Summary of key metrics

See full class description

Function Documentation

float error_rate ( ) const
inline

Get the error rate of PHIX for the run over all "usable cycles".

A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.

Returns
error rate of PHIX for run over all "usable cycles".
float first_cycle_intensity ( ) const
inline

Get the first cycle intensity

Returns
first cycle intensity
float percent_aligned ( ) const
inline

Get the percent aligned PHIX for the run

Returns
percent aligned PHIX
float percent_gt_q30 ( ) const
inline

Get the percent of bases greater than or equal to Q30 over all "usable cycles"

A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.

Returns
percent of bases greater than or equal to Q30 over all "usable cycles"
float percent_occupancy_proxy ( ) const
inline

Get the percent occupancy proxy

Also known as % loading concentration

Returns
percent occupancy proxy
float percent_occupied ( ) const
inline

Get the percent occupied

Returns
percent occupied
float projected_yield_g ( ) const
inline

Get the projected yield of the run in gigabases over all "usable cycles"

A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.

Returns
projected yield of the run in gigabases over all "usable cycles"
float yield_g ( ) const
inline

Get the yield of the run in gigabases over all "usable cycles"

A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.

Returns
yield of the run in gigabases over all "usable cycles"