Functions
ushort_t	average_cycle_intensity () const

ushort_t	corrected_int_all (const constants::dna_bases index) const INTEROP_THROW_SPEC((model

float	corrected_int_all_float (const constants::dna_bases index) const INTEROP_THROW_SPEC((model

float	corrected_int_called (const constants::dna_bases index) const INTEROP_THROW_SPEC((model

const uint_array_t &	called_counts_array () const

const float_array_t &	corrected_int_called_array () const

const ushort_array_t &	corrected_int_all_array () const

uint_t	called_counts (const constants::dna_bases index) const INTEROP_THROW_SPEC((model

uint_t	no_calls () const

float	signal_to_noise () const

uint_t	total_calls (const bool nocalls=false) const

uint_t	total_intensity () const

float	total_called_intensity () const

float	percent_base (const constants::dna_bases index) const INTEROP_THROW_SPEC((model

float_array_t	percent_bases () const

float	percent_nocall () const INTEROP_THROW_SPEC((model

Detailed Description

Per tile per cycle per channel average intensity values

See full class description

Function Documentation

ushort_t average_cycle_intensity ( ) const

inline

Average intensity over all clusters

Note: Supported version 2, not supported by 3 or later

Returns: average intensity

uint_t called_counts ( const constants::dna_bases index ) const

inline

Number of clusters called per called base (including No Calls)

This member accumulates cluster counts over all four bases and no calls (NC). This is used to calculate the percentage of clusters for which the selected base has been called.

Note: Supported by all versions

Parameters

index index of the base (NC=-1, A=0, C=1, G=2, T=3)

Returns: number of clusters called per base

const uint_array_t& called_counts_array ( ) const

inline

Number of clusters called per called base (including No Calls)

Returns: vector of called counts

ushort_t corrected_int_all ( const constants::dna_bases index ) const

inline

Average corrected intensity for each type of base: A, C, G and T

Note: Supported version 2, not supported by 3 or later

Parameters

index index of the base (A=0, C=1, G=2, T=3)

Returns: average corrected intensity for specified base

const ushort_array_t& corrected_int_all_array ( ) const

inline

Average corrected intensity for each type of base: A, C, G and T

Note: Supported version 2, not supported by 3 or later

Returns: vector of corrected called intensities

float corrected_int_all_float ( const constants::dna_bases index ) const

inline

Average corrected intensity for each type of base: A, C, G and T

Note: Supported version 2, not supported by 3 or later

Parameters

index index of the base (A=0, C=1, G=2, T=3)

Returns: average corrected intensity for specified base

float corrected_int_called ( const constants::dna_bases index ) const

inline

Average corrected intensity for only base called clusters: A, C, G and T

Note: Supported by versions 2 and 3, not later

Parameters

index index of the base (A=0, C=1, G=2, T=3)

Returns: average corrected intensity over only base called clusters

const float_array_t& corrected_int_called_array ( ) const

inline

Average corrected intensity for only base called clusters: A, C, G and T

Note: Supported by versions 2 and 3, not later

Returns: vector of corrected called intensities

uint_t no_calls ( ) const

inline

Number of clusters per no call

Note: Supported by all versions

Returns: number of clusters not called

float percent_base ( const constants::dna_bases index ) const

inline

Get the percentage per base

Note: Supported by all versions

Parameters

index index of the base (NC=-1, A=0, C=1, G=2, T=3)

Returns: percentage for given base

float_array_t percent_bases ( ) const

inline

Get the percentage per base (does not include no calls)

Note: Supported by all versions

Returns: percentage for given base

float percent_nocall ( ) const

inline

Get the percentage of no calls

Note: Supported by all versions

Returns: percentage for no calls

float signal_to_noise ( ) const

inline

The signal to noise ratio is calculated as mean called intensity divided by standard deviation of non called intensities.

Note: Only supported by version 2, not supported by version 3 or later

Returns: signal to noise calculated from mean called intensity

float total_called_intensity ( ) const

inline

Get the total summed intensity for only called clusters

Note: Supported by versions 2 and 3, not later

Returns: total summed intensity

uint_t total_calls ( const bool nocalls = false ) const

inline

Get the total number of clusters called

Note: Supported by all versions

Parameters

nocalls if true include no calls

Returns: total number of clusters called

uint_t total_intensity ( ) const

inline

Get the total summed intensity for all clusters

Note: Supported version 2, not supported by 3 or later

Returns: total summed intensity

Functions

Detailed Description

Function Documentation