Summary of key metrics
See full class description See full class description
| const metric_stat_t& cluster_count |
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const |
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inline |
Get statistics summarizing the cluster count of tiles in the lane
- Returns
- statistics summarizing the cluster count of tiles in the lane
| const metric_stat_t& cluster_count_pf |
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const |
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inline |
Get statistics summarizing the passing filter cluster count of tiles in the lane
- Returns
- statistics summarizing the passing filter cluster count of tiles in the lane
| const metric_stat_t& density |
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const |
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inline |
Get statistics summarizing the density of tiles in the lane (in clusters per mm2)
- Returns
- statistics summarizing the density of tiles in the lane
| const metric_stat_t& density_pf |
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const |
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inline |
Get statistics summarizing the passing filter density of tiles in the lane (in clusters per mm2)
- Returns
- statistics summarizing the passing filter density of tiles in the lane
| const metric_stat_t& error_rate |
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const |
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inline |
Get statistics summarizing the PhiX error rate of tiles in the lane over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- statistics summarizing the PhiX error rate of tiles in the lane over all usable cycles
| const metric_stat_t& error_rate_100 |
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const |
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inline |
Get statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane
| const metric_stat_t& error_rate_35 |
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const |
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inline |
Get statistics summarizing the PhiX error rate over the first 35 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- statistics summarizing the PhiX error rate over the first 35 usable cycles of tiles in the lane
| const metric_stat_t& error_rate_50 |
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const |
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inline |
Get statistics summarizing the PhiX error rate over the first 50 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- statistics summarizing the PhiX error rate over the first 50 usable cycles of tiles in the lane
| const metric_stat_t& error_rate_75 |
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const |
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inline |
Get statistics summarizing the PhiX error rate over the first 75 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- statistics summarizing the PhiX error rate over the first 75 usable cycles of tiles in the lane
| const metric_stat_t& first_cycle_intensity |
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const |
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inline |
Get statistics summarizing the first cycle intensity of tiles in the lane
- Returns
- statistics summarizing the first cycle intensity of tiles in the lane
| const metric_stat_t& percent_aligned |
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const |
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inline |
Get statistics summarizing the PhiX percent aligned of tiles in the lane
- Returns
- statistics summarizing the PhiX percent aligned of tiles in the lane
| float percent_gt_q30 |
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const |
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inline |
Get the percent of bases greater than or equal to Q30 over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- percent of bases greater than or equal to Q30 over all usable cycles
| const metric_stat_t& percent_occupied |
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const |
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inline |
Get mean summarizing the percent occupied
- Returns
- statistics summarizing the percent occupied
| const metric_stat_t& percent_pf |
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const |
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inline |
Get statistics summarizing the percent of clusters passing filter of tiles in the lane
- Returns
- statistics summarizing the percent of clusters passing filter of tiles in the lane
| const metric_stat_t& phasing |
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const |
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inline |
Get statistics summarizing the phasing of tiles in the lane
- Returns
- statistics summarizing the phasing of tiles in the lane
| const metric_stat_t& phasing_offset |
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const |
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inline |
Get statistics summarizing the phasing offset
- Returns
- statistics summarizing the offset of the best fit line of phasing weight vs cycle
| const metric_stat_t& phasing_slope |
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const |
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inline |
Get statistics summarizing the phasing slope
- Returns
- statistics summarizing the slope of the best fit line of phasing weight vs cycle
| const metric_stat_t& prephasing |
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const |
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inline |
Get statistics summarizing the prephasing of tiles in the lane
- Returns
- statistics summarizing the prephasing of tiles in the lane
| const metric_stat_t& prephasing_offset |
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const |
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inline |
Get statistics summarizing the prephasing offset
- Returns
- statistics summarizing the offset of the best fit line of prephasing weight vs cycle
| const metric_stat_t& prephasing_slope |
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const |
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inline |
Get statistics summarizing the prephasing slope
- Returns
- statistics summarizing the slope of the best fit line of prephasing weight vs cycle
| float projected_yield_g |
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const |
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inline |
Get the projected yield of the run in gigabases over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- projected yield of the run in gigabases over all usable cycles
Get the total number of clusters in the lane
- Returns
- total number of clusters in the lane
| uint64_t reads_pf |
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const |
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inline |
Get the total number of clusters passing filter in the lane
- Returns
- total number of clusters passing filter in the lane
Get the yield of the run in gigabases over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
- Returns
- yield of the run in gigabases over all usable cycles