Summary of key metrics
See full class description See full class description
const metric_stat_t& cluster_count 
( 
 ) 
const 

inline 
Get statistics summarizing the cluster count of tiles in the lane
 Returns
 statistics summarizing the cluster count of tiles in the lane
const metric_stat_t& cluster_count_pf 
( 
 ) 
const 

inline 
Get statistics summarizing the passing filter cluster count of tiles in the lane
 Returns
 statistics summarizing the passing filter cluster count of tiles in the lane
const metric_stat_t& density 
( 
 ) 
const 

inline 
Get statistics summarizing the density of tiles in the lane (in clusters per mm2)
 Returns
 statistics summarizing the density of tiles in the lane
const metric_stat_t& density_pf 
( 
 ) 
const 

inline 
Get statistics summarizing the passing filter density of tiles in the lane (in clusters per mm2)
 Returns
 statistics summarizing the passing filter density of tiles in the lane
const metric_stat_t& error_rate 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX error rate of tiles in the lane over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 statistics summarizing the PhiX error rate of tiles in the lane over all usable cycles
const metric_stat_t& error_rate_100 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 statistics summarizing the PhiX error rate over the first 100 usable cycles of tiles in the lane
const metric_stat_t& error_rate_35 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX error rate over the first 35 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 statistics summarizing the PhiX error rate over the first 35 usable cycles of tiles in the lane
const metric_stat_t& error_rate_50 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX error rate over the first 50 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 statistics summarizing the PhiX error rate over the first 50 usable cycles of tiles in the lane
const metric_stat_t& error_rate_75 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX error rate over the first 75 usable cycles of tiles in the lane
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 statistics summarizing the PhiX error rate over the first 75 usable cycles of tiles in the lane
const metric_stat_t& first_cycle_intensity 
( 
 ) 
const 

inline 
Get statistics summarizing the first cycle intensity of tiles in the lane
 Returns
 statistics summarizing the first cycle intensity of tiles in the lane
const metric_stat_t& percent_aligned 
( 
 ) 
const 

inline 
Get statistics summarizing the PhiX percent aligned of tiles in the lane
 Returns
 statistics summarizing the PhiX percent aligned of tiles in the lane
float percent_gt_q30 
( 
 ) 
const 

inline 
Get the percent of bases greater than or equal to Q30 over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 percent of bases greater than or equal to Q30 over all usable cycles
const metric_stat_t& percent_occupied 
( 
 ) 
const 

inline 
Get mean summarizing the percent occupied
 Returns
 statistics summarizing the percent occupied
const metric_stat_t& percent_pf 
( 
 ) 
const 

inline 
Get statistics summarizing the percent of clusters passing filter of tiles in the lane
 Returns
 statistics summarizing the percent of clusters passing filter of tiles in the lane
const metric_stat_t& phasing 
( 
 ) 
const 

inline 
Get statistics summarizing the phasing of tiles in the lane
 Returns
 statistics summarizing the phasing of tiles in the lane
const metric_stat_t& phasing_offset 
( 
 ) 
const 

inline 
Get statistics summarizing the phasing offset
 Returns
 statistics summarizing the offset of the best fit line of phasing weight vs cycle
const metric_stat_t& phasing_slope 
( 
 ) 
const 

inline 
Get statistics summarizing the phasing slope
 Returns
 statistics summarizing the slope of the best fit line of phasing weight vs cycle
const metric_stat_t& prephasing 
( 
 ) 
const 

inline 
Get statistics summarizing the prephasing of tiles in the lane
 Returns
 statistics summarizing the prephasing of tiles in the lane
const metric_stat_t& prephasing_offset 
( 
 ) 
const 

inline 
Get statistics summarizing the prephasing offset
 Returns
 statistics summarizing the offset of the best fit line of prephasing weight vs cycle
const metric_stat_t& prephasing_slope 
( 
 ) 
const 

inline 
Get statistics summarizing the prephasing slope
 Returns
 statistics summarizing the slope of the best fit line of prephasing weight vs cycle
float projected_yield_g 
( 
 ) 
const 

inline 
Get the projected yield of the run in gigabases over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 projected yield of the run in gigabases over all usable cycles
Get the total number of clusters in the lane
 Returns
 total number of clusters in the lane
uint64_t reads_pf 
( 
 ) 
const 

inline 
Get the total number of clusters passing filter in the lane
 Returns
 total number of clusters passing filter in the lane
Get the yield of the run in gigabases over all usable cycles
A "usable cycle" is a cycle that is fully corrected, so the last cycle of a read is excluded.
 Returns
 yield of the run in gigabases over all usable cycles