#include <limits>
#include <numeric>
#include <cstring>
#include <fstream>
#include "interop/util/math.h"
#include "interop/util/exception.h"
#include "interop/constants/enums.h"
#include "interop/io/format/generic_layout.h"
#include "interop/model/metric_base/metric_set.h"
#include "interop/io/layout/base_metric.h"
#include "interop/model/metric_base/metric_exceptions.h"
#include "interop/model/metric_base/base_cycle_metric.h"

Classes
class	corrected_intensity_metric
	Intensity and count metrics for each base. More...

Namespaces
	illumina

	illumina::interop

	illumina::interop::model

	illumina::interop::model::metrics

Detailed Description

Set of corrected intensity metrics

The InterOp files parsed by this class include:

InterOp/CorrectedIntMetrics.bin
InterOp/CorrectedIntMetricsOut.bin

Corrected intensities are generated once phasing and prephasing are calculated. Note, the software generates phasing/prephasing estimates after cycle 25 (for most platforms).

For 4-dye systems, the intensity corrected for cross-talk between the color channels and phasing and prephasing

For 2-dye systems, the values are calculated is another way and aid in accessing the progress of the run.

Date: 8/5/2015

Version: 1.0

Copyright: GNU Public License.

Classes

Namespaces

Detailed Description