statistics.h File Reference

#include <cstddef>
#include <limits>
#include <numeric>
#include <algorithm>
#include "interop/util/assert.h"
#include "interop/util/math.h"

Go to the source code of this file.

Classes
struct	parameter_none_type
struct	const_member_function_w< T, R, P1 >
struct	const_member_function_w< T, R, parameter_none_type >
struct	const_member_function_less_w< T, R, P1 >
struct	dummy_arg
struct	operator_none
struct	nan_check< UnaryOp >

Namespaces
	illumina
	illumina::interop
	illumina::interop::util
	illumina::interop::util::op

Functions
template<class T , typename R , typename P2 , typename P1 >
const_member_function_w< T, R, P1 >	const_member_function (const P2 &param1, R(T::*func)(P1) const)
template<class T , typename R >
const_member_function_w< T, R >	const_member_function (R(T::*func)() const)
template<class T , typename R >
const_member_function_w< T, R >	const_member_function (dummy_arg, R(T::*func)() const)
template<class T , typename R , typename P2 , typename P1 >
const_member_function_less_w< T, R, P1 >	const_member_function_less (const P2 &param1, R(T::*func)(P1) const)
template<class T , typename R >
const_member_function_less_w< T, R >	const_member_function_less (R(T::*func)() const)
template<typename I , typename O , typename F >
void	outliers_lower (I beg, I end, const F bound, O out)
template<typename I , typename O , typename F >
void	outliers_upper (I beg, I end, const F bound, O out)
template<typename I >
I	percentile (I beg, I end, const size_t percentile)
template<typename I , typename Compare >
I	percentile (I beg, I end, const size_t percentile, Compare comp)
template<typename F >
F	interpolate_linear (const F y1, const F y2, const F x1, const F x2, const F xt)
template<typename F , typename I >
F	percentile_sorted (I beg, I end, const size_t percentile)
template<typename F , typename I , typename Op >
F	percentile_sorted (I beg, I end, const size_t percentile, Op op)
template<typename I , typename UnaryOp >
I	remove_nan (I beg, I end, UnaryOp op)
template<typename I >
I	median (I beg, I end)
template<typename I , typename Compare >
I	median (I beg, I end, Compare comp)
template<typename F , typename I >
F	median_interpolated (I beg, I end)
template<typename F , typename I , typename Compare >
F	median_interpolated (I beg, I end, Compare comp)
template<typename F , typename I , typename Compare , typename Op >
F	median_interpolated (I beg, I end, Compare comp, Op op)
template<typename R , typename I , typename BinaryOp >
R	nan_mean (I beg, I end, BinaryOp op)
template<typename R , typename I , typename BinaryOp >
R	nan_variance_with_mean (I beg, I end, const R mean_val, BinaryOp op)
template<typename R , typename I , typename BinaryOp >
R	nan_variance (I beg, I end, BinaryOp op)
template<typename R , typename I , typename BinaryOp >
R	mean (I beg, I end, BinaryOp op)
template<typename R , typename I , typename BinaryOp >
R	variance_with_mean (I beg, I end, const R mean_val, BinaryOp op)
template<typename R , typename I , typename BinaryOp >
R	variance (I beg, I end, BinaryOp op)
template<typename R , typename I >
R	mean (I beg, I end)
template<typename R , typename I >
R	variance (I beg, I end)
template<typename R , typename I >
R	variance_with_mean (I beg, I end, const R mean)

Detailed Description

Functions to calculate basic statistics over InterOp metric sets

This file contains generic statistic algorithms that will work directory over InterOp metric sets.

See also

src/examples/example4.cpp

Date

3/1/16

Version

1.0

Copyright

GNU Public License.