create_imaging_table.cpp File Reference

#include "interop/logic/table/create_imaging_table.h"
#include "interop/logic/summary/map_cycle_to_read.h"
#include "interop/logic/table/create_imaging_table_columns.h"
#include "interop/logic/table/table_populator.h"
#include "interop/logic/metric/q_metric.h"
#include "interop/logic/utils/metric_type_ext.h"

Namespaces
	illumina
	illumina::interop
	illumina::interop::logic
	illumina::interop::logic::table

Macros
#define	INTEROP_TUPLE7(Id, Metric, Ignore2, Ignore3, Ignore4, Ignore5, Ignored6)   mapped_t(Id##Column,static_cast<metric_group>(metric_attributes<Metric>::TYPE)),

Functions
template<typename InputIterator , typename OutputIterator >
void	populate_imaging_table_data_by_cycle (InputIterator beg, InputIterator end, const size_t q20_idx, const size_t q30_idx, const constants::tile_naming_method naming_method, const summary::read_cycle_vector_t &cycle_to_read, const std::vector< size_t > &columns, const row_offset_map_t &row_offset, const size_t column_count, OutputIterator data_beg, OutputIterator data_end)
template<class MetricSet , typename OutputIterator >
void	populate_imaging_table_data_by_cycle (const MetricSet &metrics, const size_t q20_idx, const size_t q30_idx, const constants::tile_naming_method naming_method, const summary::read_cycle_vector_t &cycle_to_read, const std::vector< size_t > &columns, const row_offset_map_t &row_offset, const size_t column_count, OutputIterator data_beg, OutputIterator data_end)
template<typename I >
void	zero_first_column (I beg, I end, size_t column_count)
template<typename I >
void	create_imaging_table_data (const model::metrics::run_metrics &metrics, const std::vector< model::table::imaging_column > &columns, const row_offset_map_t &row_offset, I data_beg, I data_end)
template<typename I >
void	populate_imaging_table_data_t (const model::metrics::run_metrics &metrics, const std::vector< model::table::imaging_column > &columns, const row_offset_map_t &row_offset, I data_beg, const size_t n)
void	populate_imaging_table_data (const model::metrics::run_metrics &metrics, const std::vector< model::table::imaging_column > &columns, const row_offset_map_t &row_offset, float *data_beg, const size_t n) INTEROP_THROW_SPEC((model
void	count_table_rows (const model::metrics::run_metrics &metrics, row_offset_map_t &row_offset)
size_t	count_table_columns (const std::vector< model::table::imaging_column > &columns)
void	create_imaging_table (model::metrics::run_metrics &metrics, model::table::imaging_table &table)
constants::metric_group	to_group (const model::table::column_id type)
void	list_imaging_table_metrics_to_load (std::vector< unsigned char > &valid_to_load)

Detailed Description

Logic to populate the imaging table

Date

7/20/16

Version

1.0

Copyright

GNU Public License.

Macro Definition Documentation

#define INTEROP_TUPLE7	(		Id,
			Metric,
			Ignore2,
			Ignore3,
			Ignore4,
			Ignore5,
			Ignored6
	)		mapped_t(Id##Column,static_cast<metric_group>(metric_attributes<Metric>::TYPE)),