#include "interop/model/plot/filter_options.h"
#include "interop/util/option_parser.h"

Functions
std::istream &	operator>> (std::istream &in, constants::dna_bases &bases)

void	add_metric_option (illumina::interop::util::option_parser &description, std::string &metric_name)

void	add_filter_options (illumina::interop::util::option_parser &description, illumina::interop::model::plot::filter_options &options)

std::string	plot_image_name (const std::string &plot_name, const std::string &run_name, const std::string &metric_name="", const std::string &extra="")

Detailed Description

Option parsing code fo shared plot options

This is a private header file outside of any namespaces, beware!

Function Documentation

void add_filter_options	(	illumina::interop::util::option_parser &	description,
		illumina::interop::model::plot::filter_options &	options
	)

Add options to parse filter options

This adds the following options to the parser:

--filter-by-lane=<lane number>: Only the data for the selected lane will be displayed
--filter-by-channel=<channel number>: Only the data for the selected channel will be displayed
--filter-by-base=<(A,C,G,T)>: Only the data for the selected base will be displayed
--filter-by-surface=<surface number>: Only the data for the selected surface will be displayed
--filter-by-read=<read number>: Only the data for the selected read will be displayed
--filter-by-cycle=<cycle number>: Only the data for the selected cycle will be displayed
--filter-by-lane=<lane number>: Only the data for the selected lane will be displayed
--filter-by-tile-number=<tile number>: Only the data for the selected tile number will be displayed
--filter-by-swath=<swath number>: Only the data for the selected swath will be displayed
--filter-by-section=<section number>: Only the data for the selected section will be displayed

Parameters

description	option parser
options	value to hold filter options

void add_metric_option	(	illumina::interop::util::option_parser &	description,
		std::string &	metric_name
	)

Add option to parse metric name

This adds the following options to the parser:

Parameters

description	option parser
metric_name	value to hold metric name

Create a default image file name

Parameters