table_populator.h File Reference

#include <vector>
#include "interop/util/exception.h"
#include "interop/util/constant_mapping.h"
#include "interop/constants/enums.h"
#include "interop/model/run_metrics.h"
#include "interop/model/model_exceptions.h"
#include "interop/logic/utils/enums.h"
#include "interop/logic/table/table_util.h"
#include "interop/logic/summary/map_cycle_to_read.h"
#include "interop/logic/table/create_imaging_table_columns.h"

Go to the source code of this file.

Classes
class	table_populator

Namespaces
	illumina
	illumina::interop
	illumina::interop::logic
	illumina::interop::logic::table

Macros
#define	INTEROP_TUPLE7(Ignore1, Ignore2, Method, Param, Ignore4, Ignore5, Ignored6)   populate_##Method##Param(metric, read, static_cast<uint_t>(q20_idx), static_cast<uint_t>(q30_idx), naming_method, columns, data_it, data_end);
#define	INTEROP_TUPLE7(Id, Metric, Method, Param, Type, Kind, Round)

Detailed Description

Logic to populate the imaging table

Date

7/22/16

Version

1.0

Copyright

GNU Public License.

Macro Definition Documentation

#define INTEROP_TUPLE7	(		Ignore1,
			Ignore2,
			Method,
			Param,
			Ignore4,
			Ignore5,
			Ignored6
	)		populate_##Method##Param(metric, read, static_cast<uint_t>(q20_idx), static_cast<uint_t>(q30_idx), naming_method, columns, data_it, data_end);

#define INTEROP_TUPLE7	(		Id,
			Metric,
			Method,
			Param,
			Type,
			Kind,
			Round
	)

Value:

template<typename OutputIterator>\
                static void populate_##Method##Param(const model:: Metric& metric,\
                                                     const size_t Read,\
                                                     const uint_t Q20,\
                                                     const uint_t Q30,\
                                                     const constants::tile_naming_method NamingConvention,\
                                                     const std::vector<size_t>& columns,\
                                                     OutputIterator data_it, OutputIterator data_end)\
                {\
                    INTEROP_ASSERT( model::table:: Id##Column < columns.size() ); \
                    const size_t index = columns[model::table:: Id##Column];\
                    if(!is_valid(index)) return; /*Missing column */ \
                    copy_to(data_it+index, data_end, call_adapter(metric, Param, &model:: Metric::Method), Round);\
                    (void)Q20;(void)Q30;(void)NamingConvention;(void)Read;\
                }\
                template<class MetricType, typename OutputIterator>\
                static void populate_##Method##Param(const MetricType&,\
                                                     const size_t,\
                                                     const uint_t,\
                                                     const uint_t,\
                                                     const constants::tile_naming_method,\
                                                     const std::vector<size_t>&,\
                                                     OutputIterator,OutputIterator){}