check_imaging_table_column.h File Reference

#include <vector>
#include "interop/util/exception.h"
#include "interop/util/constant_mapping.h"
#include "interop/constants/enums.h"
#include "interop/logic/utils/enums.h"
#include "interop/model/run_metrics.h"
#include "interop/model/model_exceptions.h"
#include "interop/model/table/imaging_column.h"
#include "interop/logic/table/table_util.h"

Go to the source code of this file.

Classes
class	check_imaging_table_column

Namespaces
	illumina
	illumina::interop
	illumina::interop::logic
	illumina::interop::logic::table

Macros
#define	INTEROP_TUPLE7(Ignore1, Ignore2, Method, Param, Ignore4, Ignore5, Ignored6)   set_filled_##Method##Param(metrics, filled, force_true);
#define	INTEROP_TUPLE7(Ignore1, Ignore2, Method, Param, Ignore4, Ignore5, Ignored6)   set_filled_metric_##Method##Param(metric, read, static_cast<uint_t>(q20_idx), static_cast<uint_t>(q30_idx), naming_method, filled);
#define	INTEROP_TUPLE7(Ignored0, Ignored1, Ignored2, Ignored3, Ignored4, Ignored5, Round)   Round,
#define	INTEROP_TUPLE7(Id, Metric, Method, Param, Ignored1, Ignored2, Ignored3)
#define	INTEROP_TUPLE7(Id, Metric, Method, Param, Ignored1, Ignored2, Ignored3)

Detailed Description

Logic to check if a column should be populated

Date

7/22/16

Version

1.0

Copyright

GNU Public License.

Macro Definition Documentation

#define INTEROP_TUPLE7	(		Ignore1,
			Ignore2,
			Method,
			Param,
			Ignore4,
			Ignore5,
			Ignored6
	)		set_filled_##Method##Param(metrics, filled, force_true);

#define INTEROP_TUPLE7	(		Ignore1,
			Ignore2,
			Method,
			Param,
			Ignore4,
			Ignore5,
			Ignored6
	)		set_filled_metric_##Method##Param(metric, read, static_cast<uint_t>(q20_idx), static_cast<uint_t>(q30_idx), naming_method, filled);

#define INTEROP_TUPLE7	(		Ignored0,
			Ignored1,
			Ignored2,
			Ignored3,
			Ignored4,
			Ignored5,
			Round
	)		Round,

#define INTEROP_TUPLE7	(		Id,
			Metric,
			Method,
			Param,
			Ignored1,
			Ignored2,
			Ignored3
	)

Value:

static void set_filled_##Method##Param(const model::metric_base::metric_set<model:: Metric>& metrics, std::vector<bool>& filled, const bool force_true)\
                {\
                    filled[model::table::Id##Column] = (force_true) ? true : metrics.size()>0;\
                }\
                static void set_filled_##Method##Param(const model::metric_base::empty_header&, std::vector<bool>&, const bool){}

#define INTEROP_TUPLE7	(		Id,
			Metric,
			Method,
			Param,
			Ignored1,
			Ignored2,
			Ignored3
	)

Value:

static void set_filled_metric_##Method##Param(const model::Metric& metric,\
                                                     const size_t Read,\
                                                     const uint_t Q20,\
                                                     const uint_t Q30,\
                                                     const constants::tile_naming_method NamingConvention,\
                                                     std::vector<bool>& filled)\
                {\
                    if(is_valid(call_adapter(metric, Param, &model:: Metric::Method))) filled[model::table::Id##Column] = true;\
                    (void)Q20;(void)Q30;(void)NamingConvention;(void)Read;\
                }\
                static void set_filled_metric_##Method##Param(const model::metric_base::empty_metric&,\
                                                     const size_t,\
                                                     const uint_t,\
                                                     const uint_t,\
                                                     const constants::tile_naming_method,\
                                                     std::vector<bool>&){}