#include <iostream>
#include <iomanip>
#include "interop/io/metric_file_stream.h"
#include "interop/logic/summary/index_summary.h"
#include "interop/util/option_parser.h"
#include "interop/version.h"
#include "inc/application.h"

Functions
void	print_summary (std::ostream &out, const index_flowcell_summary &summary, const bool csv_format)

int	main (int argc, const char **argv)

template<typename I >
void	print_array (std::ostream &out, I beg, I end, const size_t width, const char fillch)

template<size_t N>
size_t	size_of (const char *(&)[N])

template<size_t N>
void	print_array (std::ostream &out, const char *(&values)[N], const size_t width, const char fillch)

template<size_t N>
void	print_array (std::ostream &out, std::string(&values)[N], const size_t width, const char fillch)

void	print_array (std::ostream &out, const std::vector< std::string > &values, const size_t width, const char fillch)

std::string	format (const float val, const int width, const int precision, const float scale=1)

std::string	format (const model::run::cycle_range &rng)

std::string	format_read (const run::read_info &read)

void	populate_index (const index_count_summary &summary, std::vector< std::string > &values)

void	print_summary (std::ostream &out, const index_lane_summary &summary, const bool csv_format)

Function Documentation

std::string format	(	const float	val,
		const int	width,
		const int	precision,
		const float	scale = `1`
	)

Format a floating point value to the given width and precision as a string

Parameters

val	to format as a string
width	width of number
precision	number of values after decimal
scale	to divide number

Returns: string representation of value

std::string format ( const model::run::cycle_range & rng )

Format cycle range as a string

Parameters

rng	range to format as a string

Returns: string representation of cycle range

std::string format_read ( const run::read_info & read )

int main	(	int	argc,
		const char **	argv
	)

void populate_index	(	const index_count_summary &	summary,
		std::vector< std::string > &	values
	)

void print_array	(	std::ostream &	out,
		I	beg,
		I	end,
		const size_t	width,
		const char	fillch
	)

Take a collection of strings and print them using a fixed width

Parameters

out	output stream
beg	iterator to start of collection
end	iterator to end of collection
width	of fill characters around string
fillch	fill character (space by default)

void print_array	(	std::ostream &	out,
		const char *(&)	values[N],
		const size_t	width,
		const char	fillch
	)

Take a array of strings and print them using a fixed width

Parameters

out	output stream
values	array of string values
width	of fill characters around string
fillch	fill character (space by default)

void print_array	(	std::ostream &	out,
		std::string(&)	values[N],
		const size_t	width,
		const char	fillch
	)

Take a array of strings and print them using a fixed width

Parameters

out	output stream
values	array of string values
width	of fill characters around string
fillch	fill character (space by default)

void print_array	(	std::ostream &	out,
		const std::vector< std::string > &	values,
		const size_t	width,
		const char	fillch
	)

Take a vector of strings and print them using a fixed width

Parameters

out	output stream
values	vector of string values
width	of fill characters around string
fillch	fill character (space by default)

void print_summary	(	std::ostream &	out,
		const index_flowcell_summary &	summary,
		const bool	csv_format
	)

Print the summary metrics to the given output stream

Parameters

out	output stream
summary	summary metrics
csv_format	if true, write in CSV format

void print_summary	(	std::ostream &	out,
		const index_lane_summary &	summary,
		const bool	csv_format
	)

size_t size_of ( const char * (&)[N] )

Get number of elements in stack array

Returns: number of elements

Functions

Function Documentation