read_info.h

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#pragma once

#include <algorithm>
#include "interop/model/run/cycle_range.h"
#include "interop/io/format/generic_layout.h"

namespace illumina { namespace interop { namespace model { namespace run
{

    class read_info : public cycle_range
    {
    public:
        typedef size_t number_t;
    public:
        read_info(const number_t number = 0,
                  const cycle_t first_cycle = 0,
                  const cycle_t last_cycle = 0,
                  const bool is_index = false,
                  const bool is_reverse_complement = false) : cycle_range(first_cycle, last_cycle), m_number(number),
                                                              m_is_index(is_index),
                                                              m_is_reverse_complement(is_reverse_complement)
        {
        }

    public:
        number_t number() const
        {
            return m_number;
        }

        bool is_index() const
        {
            return m_is_index;
        }

        bool is_reverse_complement() const
        {
            return m_is_reverse_complement;
        }
        cycle_t total_cycles() const
        {
            return (m_last_cycle >= m_first_cycle) ? m_last_cycle - m_first_cycle + 1 : 0;
        }

        cycle_t useable_cycles() const
        {
            return (m_last_cycle >= m_first_cycle) ? m_last_cycle - m_first_cycle : 0;
        }
    private:
        size_t m_number;
        bool m_is_index;
        bool m_is_reverse_complement;

        friend class info;

        template<class MetricType, int Version>
        friend
        struct io::generic_layout;
    };

}}}}