core.py File Reference

Namespaces

 core
 

Functions

def index_summary (run_metrics, level='Lane', columns=None, dtype='f4', extra)
 
def index_summary_columns
 
def summary (run_metrics, level='Total', columns=None, dtype='f4', ignore_missing_columns=True, extra)
 
def load_summary_metrics ()
 
def summary_columns
 
def indexing (run_metrics, per_sample=True, dtype='f4', stype='O', extra)
 
def imaging (run_metrics, dtype='f4', extra)
 
def imaging_columns (run_metrics, extra)
 
def read (run, valid_to_load=None, requires=None, search_paths=None, extra)
 
def read_metric
 
def create_valid_to_load (interop_prefixes)
 
def enable_metrics (valid_to_load, interop_prefixes)
 
def load_to_string_list (valid_to_load)
 
def group_from_filename (filename)
 
def load_imaging_metrics ()
 

Variables

tuple _summary_levels = ('Total', 'NonIndex', 'Read', 'Lane', 'Surface')
 
tuple _index_summary_levels = ('Lane', 'Barcode')