Functions
template<class Point >
void	plot_by_cycle_t (model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< Point > &data, const bool skip_empty)

template<class Point >
void	plot_by_cycle_t (model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::plot_data< Point > &data, const bool skip_empty)

void	plot_by_cycle (model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_by_cycle (model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty) INTEROP_THROW_SPEC((model

template<class Point >
void	plot_by_lane_t (const model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< Point > &data, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_by_lane (const model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_by_lane (const model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_flowcell_map (model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::flowcell_data &data, float buffer,::uint32_t tile_buffer, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_flowcell_map (model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::flowcell_data &data, float buffer,::uint32_t tile_buffer, const bool skip_empty) INTEROP_THROW_SPEC((model

void	plot_qscore_heatmap (model::metrics::run_metrics &metrics, const model::plot::filter_options &options, model::plot::heatmap_data &data, float *buffer, const size_t) INTEROP_THROW_SPEC((model

void	plot_qscore_histogram (model::metrics::run_metrics &metrics, const model::plot::filter_options &options, model::plot::plot_data< model::plot::bar_point > &data, const size_t boundary) INTEROP_THROW_SPEC((model

void	plot_sample_qc (model::metrics::run_metrics &metrics, const size_t lane, model::plot::plot_data< model::plot::bar_point > &data)

Variables
void plot_by_cycle(model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void plot_by_cycle(model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void	list_by_cycle_metrics (std::vector< logic::utils::metric_type_description_t > &types, const bool ignore_accumulated=false)

void plot_by_lane(const model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void plot_by_lane(const model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::plot_data< model::plot::candle_stick_point > &data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void	list_by_lane_metrics (std::vector< logic::utils::metric_type_description_t > &types, const bool ignore_pf=false)

void plot_flowcell_map(model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::flowcell_data &data, float buffer=0,::uint32_t tile_buffer=0, const bool skip_empty=true) INTEROP_THROW_SPEC((model voi	plot_flowcell_map2 )(model::metrics::run_metrics &metrics, const constants::metric_type type, const model::plot::filter_options &options, model::plot::flowcell_data &data, float buffer, const size_t buffer_size,::uint32_t id_buffer, const size_t id_buffer_size, const bool skip_empty=true) INTEROP_THROW_SPEC((model

void plot_qscore_heatmap(model::metrics::run_metrics &metrics, const model::plot::filter_options &options, model::plot::heatmap_data &data, float *buffer=0, const size_t buffer_size=0) INTEROP_THROW_SPEC((model size_	count_rows_for_heatmap )(const model::metrics::run_metrics &metrics)

Detailed Description

Function Documentation

void illumina::interop::logic::plot::plot_by_cycle	(	model::metrics::run_metrics &	metrics,
		const constants::metric_type	type,
		const model::plot::filter_options &	options,
		model::plot::plot_data< model::plot::candle_stick_point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by cycle

Parameters

metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_by_cycle	(	model::metrics::run_metrics &	metrics,
		const std::string &	metric_name,
		const model::plot::filter_options &	options,
		model::plot::plot_data< model::plot::candle_stick_point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by cycle using the candle stick model

void illumina::interop::logic::plot::plot_by_cycle_t	(	model::metrics::run_metrics &	metrics,
		const constants::metric_type	type,
		const model::plot::filter_options &	options,
		model::plot::plot_data< Point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by cycle

Parameters

metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_by_cycle_t	(	model::metrics::run_metrics &	metrics,
		const std::string &	metric_name,
		const model::plot::filter_options &	options,
		model::plot::plot_data< Point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by cycle

void illumina::interop::logic::plot::plot_by_lane	(	const model::metrics::run_metrics &	metrics,
		const constants::metric_type	type,
		const model::plot::filter_options &	options,
		model::plot::plot_data< model::plot::candle_stick_point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by lane

Parameters

metrics	run metrics
type	specific metric value to plot by lane
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_by_lane	(	const model::metrics::run_metrics &	metrics,
		const std::string &	metric_name,
		const model::plot::filter_options &	options,
		model::plot::plot_data< model::plot::candle_stick_point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by cycle

void illumina::interop::logic::plot::plot_by_lane_t	(	const model::metrics::run_metrics &	metrics,
		const constants::metric_type	type,
		const model::plot::filter_options &	options,
		model::plot::plot_data< Point > &	data,
		const bool	skip_empty
	)

Plot a specified metric value by lane

Parameters

metrics	run metrics
type	specific metric value to plot by lane
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_flowcell_map	(	model::metrics::run_metrics &	metrics,
		const constants::metric_type	type,
		const model::plot::filter_options &	options,
		model::plot::flowcell_data &	data,
		float *	buffer,
		::uint32_t *	tile_buffer,
		const bool	skip_empty
	)

Plot a flowcell map

Parameters

metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
tile_buffer	preallocated memory for tile ids
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_flowcell_map	(	model::metrics::run_metrics &	metrics,
		const std::string &	metric_name,
		const model::plot::filter_options &	options,
		model::plot::flowcell_data &	data,
		float *	buffer,
		::uint32_t *	tile_buffer,
		const bool	skip_empty
	)

Plot a flowcell map

Parameters

metrics	run metrics
metric_name	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
tile_buffer	preallocated memory for tile ids
skip_empty	set false for testing purposes

void illumina::interop::logic::plot::plot_qscore_heatmap	(	model::metrics::run_metrics &	metrics,
		const model::plot::filter_options &	options,
		model::plot::heatmap_data &	data,
		float *	buffer,
		const size_t
	)

Plot a heat map of q-scores

Parameters

metrics	run metrics
options	options to filter the data
data	output heat map data
buffer	preallocated memory

void illumina::interop::logic::plot::plot_qscore_histogram	(	model::metrics::run_metrics &	metrics,
		const model::plot::filter_options &	options,
		model::plot::plot_data< model::plot::bar_point > &	data,
		const size_t	boundary
	)

Plot a histogram of q-scores

Parameters

metrics	run metrics
options	options to filter the data
data	output plot data
boundary	index of bin to create the boundary sub plots (0 means do nothing)

void illumina::interop::logic::plot::plot_sample_qc	(	model::metrics::run_metrics &	metrics,
		const size_t	lane,
		model::plot::plot_data< model::plot::bar_point > &	data
	)

Plot reads identified versus index

Parameters

metrics	run metrics
lane	lane number
data	output plot data

Variable Documentation

void plot_qscore_heatmap (model::metrics::run_metrics& metrics, const model::plot::filter_options& options, model::plot::heatmap_data& data, float* buffer=0, const size_t buffer_size=0) INTEROP_THROW_SPEC((model size_ count_rows_for_heatmap) (const model::metrics::run_metrics &metrics)

Plot a heat map of q-scores

Parameters

metrics	run metrics
options	options to filter the data
data	output heat map data
buffer	optional buffer of preallocated memory (for SWIG)
buffer_size	number of elements in buffer Count number of rows for the heat map
metrics	run metrics

Returns: number of rows

void plot_by_cycle (model::metrics::run_metrics& metrics, const constants::metric_type type, const model::plot::filter_options& options, model::plot::plot_data<model::plot::candle_stick_point>& data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void plot_by_cycle (model::metrics::run_metrics& metrics, const std::string& metric_name, const model::plot::filter_options& options, model::plot::plot_data<model::plot::candle_stick_point>& data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void list_by_cycle_metrics(std::vector< logic::utils::metric_type_description_t > &types, const bool ignore_accumulated=false)

Plot a specified metric value by cycle

Parameters

metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes Plot a specified metric value by cycle using the candle stick model

List metric types available for by cycle plots

Parameters

types	destination vector to fill with metric types
ignore_accumulated	if true, ignore accumulated Q20 and Q30

void plot_by_lane (const model::metrics::run_metrics& metrics, const constants::metric_type type, const model::plot::filter_options& options, model::plot::plot_data<model::plot::candle_stick_point>& data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void plot_by_lane (const model::metrics::run_metrics& metrics, const std::string& metric_name, const model::plot::filter_options& options, model::plot::plot_data<model::plot::candle_stick_point>& data, const bool skip_empty=true) INTEROP_THROW_SPEC((model void list_by_lane_metrics(std::vector< logic::utils::metric_type_description_t > &types, const bool ignore_pf=false)

Plot a specified metric value by lane

Parameters

metrics	run metrics
type	specific metric value to plot by lane
options	options to filter the data
data	output plot data
skip_empty	set false for testing purposes Plot a specified metric value by cycle

List metric types available for by lane plots

Parameters

types	destination vector to fill with metric types
ignore_pf	if true, ignore density PF and cluster PF

void plot_flowcell_map (model::metrics::run_metrics& metrics, const std::string& metric_name, const model::plot::filter_options& options, model::plot::flowcell_data& data, float* buffer=0, ::uint32_t* tile_buffer=0, const bool skip_empty=true) INTEROP_THROW_SPEC((model voi plot_flowcell_map2) (model::metrics::run_metrics &metrics, const std::string &metric_name, const model::plot::filter_options &options, model::plot::flowcell_data &data, float *buffer, const size_t buffer_size,::uint32_t *id_buffer, const size_t id_buffer_size, const bool skip_empty=true) INTEROP_THROW_SPEC((model

inline

Plot a flowcell map

Parameters

metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
tile_buffer	preallocated memory for tile ids
skip_empty	set false for testing purposes Plot a flowcell map
metrics	run metrics
type	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
buffer_size	size of the buffer
id_buffer	preallocated memory for tile ids
id_buffer_size	size of the buffer
skip_empty	set false for testing purposes

Plot a flowcell map

Parameters

metrics	run metrics
metric_name	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
tile_buffer	preallocated memory for tile ids
skip_empty	set false for testing purposes Plot a flowcell map
metrics	run metrics
metric_name	specific metric value to plot by cycle
options	options to filter the data
data	output flowcell map
buffer	preallocated memory for data
buffer_size	size of the buffer
id_buffer	preallocated memory for tile ids
id_buffer_size	size of the buffer
skip_empty	set false for testing purposes

Functions

Variables

Detailed Description

Function Documentation

Variable Documentation