|
| enum | common { Unknown = 0x800
} |
| |
| enum | metric_type {
Intensity,
FWHM,
BasePercent,
PercentNoCall,
Q20Percent,
Q30Percent,
AccumPercentQ20,
AccumPercentQ30,
QScore,
Clusters,
ClustersPF,
ClusterCount,
ClusterCountPF,
ErrorRate,
PercentPhasing,
PercentPrephasing,
PercentAligned,
Phasing,
PrePhasing,
CorrectedIntensity,
CalledIntensity,
SignalToNoise,
OccupiedCountK,
PercentOccupied,
PercentPF,
MetricTypeCount,
UnknownMetricType = 0x800
} |
| |
| enum | metric_group {
CorrectedInt,
Error,
Extraction,
Image,
Index,
Q,
Tile,
QByLane,
QCollapsed,
EmpiricalPhasing,
DynamicPhasing,
ExtendedTile,
SummaryRun,
MetricCount,
UnknownMetricGroup = 0x800
} |
| |
| enum | tile_naming_method {
FourDigit,
FiveDigit,
Absolute,
TileNamingMethodCount,
UnknownTileNamingMethod = 0x800
} |
| |
| enum | dna_bases {
NC = -1,
A,
C,
G,
T,
NUM_OF_BASES,
NUM_OF_BASES_AND_NC,
UnknownBase = 0x800
} |
| |
| enum | surface_type { SentinelSurface,
Top,
Bottom,
UnknownSurface = 0x800
} |
| |
| enum | instrument_type {
HiSeq,
HiScan,
MiSeq,
NextSeq,
MiniSeq,
NovaSeq,
iSeq,
NextSeq1k2k,
InstrumentCount,
UnknownInstrument = 0x800
} |
| |
| enum | metric_base_type {
BaseTileType,
BaseCycleType,
BaseReadType,
BaseLaneType,
BaseRunType,
BaseMetricCount,
UnknownBaseType = 0x800
} |
| |
| enum | plot_colors {
Red,
Green,
Blue,
Black,
PlotColorCount,
UnknownColor = 0x800
} |
| |
| enum | bar_plot_options { Centered,
Shifted,
UnknownBarPlotOption = 0x800
} |
| |
| enum | metric_data {
IdType,
ValueType,
StructType,
ChannelArray,
BaseArray,
MetricDataCount,
UnknownMetricData = 0x800
} |
| |
| enum | metric_feature_type {
TileFeature = 0x01,
CycleFeature = 0x02,
ReadFeature = 0x04,
BaseFeature = 0x08,
ChannelFeature = 0x10,
LaneFeature = 0x20,
DiskFeature = 0x400,
UnknownMetricFeature = 0x800
} |
| |
| enum | plot_types {
FlowcellPlot,
ByCyclePlot,
ByLanePlot,
QHistogramPlot,
QHeatmapPlot,
SampleQCPlot,
UnknownPlotType = 0x800
} |
| |
Enumerated constants
See full class description
Options for a bar plot
| Enumerator |
|---|
| Centered |
Bar centered on x-value
|
| Shifted |
Bar shifted to start on x-value
|
| UnknownBarPlotOption |
|
Common codes for all enums
DNA base constants
| Enumerator |
|---|
| NC |
No calls
|
| A |
DNA base adenine
|
| C |
DNA base cytosine
|
| G |
DNA base guanine
|
| T |
DNA base thymine
|
| NUM_OF_BASES |
Number of bases
|
| NUM_OF_BASES_AND_NC |
Number of bases including no calls
|
| UnknownBase |
Unknown base
|
Instrument type
| Enumerator |
|---|
| HiSeq |
|
| HiScan |
|
| MiSeq |
|
| NextSeq |
|
| MiniSeq |
|
| NovaSeq |
|
| iSeq |
|
| NextSeq1k2k |
|
| InstrumentCount |
|
| UnknownInstrument |
|
Base types for each metric
| Enumerator |
|---|
| BaseTileType |
Tile base types are written out once for each tile
|
| BaseCycleType |
Cycle base types are written out once for each tile and cycle
|
| BaseReadType |
Read base types are written out once for each tile and read
|
| BaseLaneType |
Lane base types are written out once for each lane and cycle
|
| BaseRunType |
Run base types are written out once per run
|
| BaseMetricCount |
|
| UnknownBaseType |
|
Options for a bar plot
| Enumerator |
|---|
| IdType |
|
| ValueType |
|
| StructType |
|
| ChannelArray |
|
| BaseArray |
|
| MetricDataCount |
|
| UnknownMetricData |
|
Options describing metric features
| Enumerator |
|---|
| TileFeature |
|
| CycleFeature |
|
| ReadFeature |
|
| BaseFeature |
|
| ChannelFeature |
|
| LaneFeature |
|
| DiskFeature |
|
| UnknownMetricFeature |
|
Codes for each metric group
| Enumerator |
|---|
| CorrectedInt |
|
| Error |
|
| Extraction |
|
| Image |
|
| Index |
|
| Q |
|
| Tile |
|
| QByLane |
|
| QCollapsed |
|
| EmpiricalPhasing |
|
| DynamicPhasing |
|
| ExtendedTile |
|
| SummaryRun |
|
| MetricCount |
|
| UnknownMetricGroup |
|
Codes for each metric type
| Enumerator |
|---|
| Intensity |
|
| FWHM |
|
| BasePercent |
|
| PercentNoCall |
|
| Q20Percent |
|
| Q30Percent |
|
| AccumPercentQ20 |
|
| AccumPercentQ30 |
|
| QScore |
|
| Clusters |
|
| ClustersPF |
|
| ClusterCount |
|
| ClusterCountPF |
|
| ErrorRate |
|
| PercentPhasing |
|
| PercentPrephasing |
|
| PercentAligned |
|
| Phasing |
|
| PrePhasing |
|
| CorrectedIntensity |
|
| CalledIntensity |
|
| SignalToNoise |
|
| OccupiedCountK |
|
| PercentOccupied |
|
| PercentPF |
|
| MetricTypeCount |
|
| UnknownMetricType |
|
Color codes for plotting
| Enumerator |
|---|
| Red |
Color for red channel (or A)
|
| Green |
Color for green channel or (C)
|
| Blue |
Color for G
|
| Black |
Color for T
|
| PlotColorCount |
|
| UnknownColor |
|
Options for a bar plot
| Enumerator |
|---|
| FlowcellPlot |
Spatial plot by tile
|
| ByCyclePlot |
Plot data aggrergated by cycle
|
| ByLanePlot |
Spatial plot aggrergated by lane
|
| QHistogramPlot |
Histogram of q-scores
|
| QHeatmapPlot |
Heatmap of q-scores by cycle
|
| SampleQCPlot |
Indexing tab plot
|
| UnknownPlotType |
Unknown plot type
|
Flow cell surface code
| Enumerator |
|---|
| SentinelSurface |
|
| Top |
|
| Bottom |
|
| UnknownSurface |
|
Tile naming conventions used in various Illumina Platforms
| Enumerator |
|---|
| FourDigit |
Four digit tiles for HiSeq and modern MiSeqs
|
| FiveDigit |
Five digit tiles for NextSeq and ...
|
| Absolute |
Absolute naming for tiles GAs and old MiSeqs
|
| TileNamingMethodCount |
Number of naming methods
|
| UnknownTileNamingMethod |
|