Applications

The InterOp package includes several command line tools to extraction information from InterOp files.

Content	Description
dumptext	Deprecated: Convert binary InterOp data into a CSV formatted txt file
imaging_table	Generate the SAV Imaging Tab table as a CSV text file
summary	Generate the SAV Summary Tab summary table as a text file
plot_by_cycle	Generate the SAV Analysis Tab By Cycle Plot as a GNUPlot text file
plot_by_lane	Generate the SAV Analysis Tab By Lane Plot as a GNUPlot text file
plot_flowcell	Generate the SAV Analysis Tab Flowcell heat map as a GNUPlot text file
plot_qscore_histogram	Generate the SAV Analysis Tab Q-score histogram as a GNUPlot text file
plot_qscore_heatmap	Generate the SAV Analysis Tab Q-score heat map as a GNUPlot text file
plot_sample_qc	Generate the SAV Indexing Tab index graph as a GNUPlot text file
index-summary	Generate the SAV Indexing Tab summary table as a CSV text file
dumpbin	Developer app to help create unit tests by dumping the binary format
aggregate	Aggregate by cycle InterOps

Note: dumptext has been deprecated in favor of imaging_table