Applications

The InterOp package includes several command line tools to extraction information from InterOp files.

Content Description
dumptext Convert binary InterOp data into a CSV formatted txt file
imaging_table Generate the SAV Imaging Tab table as a CSV text file
summary Generate the SAV Summary Tab summary table as a text file
plot_by_cycle Generate the SAV Analysis Tab By Cycle Plot as a GNUPlot text file
plot_by_lane Generate the SAV Analysis Tab By Lane Plot as a GNUPlot text file
plot_flowcell Generate the SAV Analysis Tab Flowcell heat map as a GNUPlot text file
plot_qscore_histogram Generate the SAV Analysis Tab Q-score histogram as a GNUPlot text file
plot_qscore_heatmap Generate the SAV Analysis Tab Q-score heat map as a GNUPlot text file
plot_sample_qc Generate the SAV Indexing Tab index graph as a GNUPlot text file
index-summary Generate the SAV Indexing Tab summary table as a CSV text file
dumpbin Developer app to help create unit tests by dumping the binary format
aggregate Aggregate by cycle InterOps

Note: interop2csv has been deprecated in favor of dumptext