This application writes out a CSV file containing the same data as the SAV Imaging tab.

Running the Program

The program runs as follows:

 $ imaging_table 9166157_221Bin2R0I

In this sample, 9166157_221Bin2R0I is a run folder and the summary is written to the standard output.

 # Run Folder: 9166157_221Bin2R0I
 Lane,Tile,Cycle,Read,Cycle Within Read,Density(k/mm2),Density Pf(k/mm2),Cluster Count (k),Cluster Count Pf (k),% Pass Filter,% Aligned,% Phasing,% Prephasing,Error Rate,%>= Q20,%>= Q30,P90|A,P90|C,P90|G,P90|T,% No Calls,% Base|A,% Base|C,% Base|G,% Base|T,Fwhm|A,Fwhm|C,Fwhm|G,Fwhm|T,Corrected|A,Corrected|C,Corrected|G,Corrected|T,Called|A,Called|C,Called|G,Called|T,Signal To Noise,Time,Surface,Swath,Tile Number
 1,1101,1,1,1,2353.8,864,6470,2375,36.7,97.6,0,0.131,0.29,95.2,5.07,246,419,274,587,63.3,12.6,25,21.1,41.3,2.2,2.38,2.23,2.26,117,95,103,117,386,369,382,394,0,9.85889e+18,1,1,1
 2,1101,1,1,1,2353.8,1060.2,6470,2914.2,45,97.5,0.217,0.128,0.327,95.87,75.77,264,451,305,709,55,13,25.5,21.5,40,2.12,2.34,2.08,2.09,102,84,90,98,366,342,346,377,0,9.85889e+18,1,1,1
 3,1101,1,1,1,2353.8,855.2,6470,2350.7,36.3,98.3,0,0.063,0.363,95.07,77.02,219,373,244,580,63.7,12.5,24.4,21.2,41.9,2.02,2.31,2.04,2.05,108,82,98,103,364,338,354,362,0,9.85889e+18,1,1,1
 ....