Information used in the SAV Indexing Tab
See full class description
| index_count_summary& at |
( |
const size_t |
n | ) |
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inline |
Get reference to lane summary at given index
- Deprecated:
- Will be removed in next feature version (use operator[] instead for C++ Code)
- Parameters
-
- Returns
- reference to lane summary
| const_reference at |
( |
const size_type |
n | ) |
const |
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inline |
Get constant reference to lane summary at given index
- Deprecated:
- Will be removed in next feature version (use operator[] instead for C++ Code)
- Parameters
-
- Returns
- constant reference to lane summary
| float mapped_reads_cv |
( |
| ) |
const |
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inline |
Coefficient of variation of the mapped reads
This is a measure of relative variability
- Returns
- coefficient of variation of the mapped reads
| float max_mapped_reads |
( |
| ) |
const |
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inline |
Maximum of the mapped reads
- Returns
- maximum of the mapped reads
| float min_mapped_reads |
( |
| ) |
const |
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inline |
Minimum of the mapped reads
- Returns
- minimum of the mapped reads
| index_count_summary& operator[] |
( |
const size_type |
n | ) |
|
|
inline |
Get reference to lane summary at given index
Note, in Python, C#, etc, this is converted to .at(index)
- Parameters
-
- Returns
- reference to lane summary
| const index_count_summary& operator[] |
( |
const size_t |
n | ) |
const |
|
inline |
Get constant reference to lane summary at given index
Note, in Python, C#, etc, this is converted to .at(index)
- Parameters
-
- Returns
- constant reference to lane summary
| float total_fraction_mapped_reads |
( |
| ) |
const |
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inline |
Total fraction of mapped reads (this is stored as a percent)
Displayed as % Reads Identified (PF) in SAV
- Returns
- total fraction of mapped reads
| read_count_t total_pf_reads |
( |
| ) |
const |
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inline |
Total PF reads
- Returns
- total PF reads
| read_count_t total_reads |
( |
| ) |
const |
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inline |
Total Reads
- Returns
- total reads