tile_metric Member List

This is the complete list of members for tile_metric, including all inherited members.

base_metric(const uint_t lane=0, const uint_t tile=0)base_metricinline
base_t typedefbase_metric
cluster_count() const tile_metricinline
cluster_count_k() const tile_metricinline
cluster_count_m() const tile_metricinline
cluster_count_pf() const tile_metricinline
cluster_count_pf_k() const tile_metricinline
cluster_count_pf_m() const tile_metricinline
cluster_density() const tile_metricinline
cluster_density_k() const tile_metricinline
cluster_density_pf() const tile_metricinline
cluster_density_pf_k() const tile_metricinline
clusterCount() const tile_metricinline
clusterCountPf() const tile_metricinline
clusterDensity() const tile_metricinline
clusterDensityPf() const tile_metricinline
const_iterator typedeftile_metric
create_id(const id_t lane, const id_t tile, const id_t=0)base_metricinlinestatic
CYCLE_BIT_COUNT enum valuebase_metric
CYCLE_BIT_SHIFT enum valuebase_metric
header_type typedeftile_metric
id() const base_metricinline
id_t typedefbase_metric
io::generic_layouttile_metricfriend
is_dead_tile() const tile_metricinline
lane() const base_metricinline
LANE_BIT_COUNT enum valuebase_metric
LANE_BIT_SHIFT enum valuebase_metric
lane_from_id(const id_t id)base_metricinlinestatic
lane_t typedefbase_metric
LATEST_VERSION enum valuetile_metric
number(const illumina::interop::constants::tile_naming_method) const base_metricinline
operator<(const base_metric &metric2) const base_metricinline
illumina::interop::model::metric_base::empty_metric::operator<(const empty_metric &) const empty_metricinline
percent_aligned(const size_t n) const tile_metricinline
percent_aligned_at(const size_t number) const tile_metricinline
percent_pf() const tile_metricinline
percent_phasing(const size_t n) const tile_metricinline
percent_phasing_at(const size_t number) const tile_metricinline
percent_prephasing(const size_t n) const tile_metricinline
percent_prephasing_at(const size_t number) const tile_metricinline
phyiscalLocationColumn(const illumina::interop::constants::tile_naming_method method, const uint_t swath_count, const bool all_surfaces) const base_metricinline
phyiscalLocationIndex(const illumina::interop::constants::tile_naming_method method, const uint_t section_per_lane, const uint_t tile_count, const uint_t swath_count, const bool all_surfaces) const base_metricinline
phyiscalLocationRow(const illumina::interop::constants::tile_naming_method method, const uint_t section_per_lane, const uint_t tile_count) const base_metricinline
physical_location_column(const illumina::interop::constants::tile_naming_method method, const uint_t swath_count, const bool all_surfaces) const base_metricinline
physical_location_index(const illumina::interop::constants::tile_naming_method method, const uint_t section_per_lane, const uint_t tile_count, const uint_t swath_count, const bool all_surfaces) const base_metricinline
physical_location_row(const illumina::interop::constants::tile_naming_method method, const uint_t section_per_lane, const uint_t tile_count) const base_metricinline
prefix()tile_metricinlinestatic
READ_BIT_COUNT enum valuebase_metric
READ_BIT_SHIFT enum valuebase_metric
read_count() const tile_metricinline
read_metric_type typedeftile_metric
read_metric_vector typedeftile_metric
read_metrics() const tile_metricinline
RESERVED_BIT_COUNT enum valuebase_metric
section(const illumina::interop::constants::tile_naming_method method) const base_metricinline
set_base(const uint_t lane, const uint_t tile)base_metricinline
set_base(const BaseMetric &base)base_metricinline
suffix()base_metricinlinestatic
surface(const illumina::interop::constants::tile_naming_method method) const base_metricinline
swath(const illumina::interop::constants::tile_naming_method method) const base_metricinline
tile() const base_metricinline
TILE_BIT_COUNT enum valuebase_metric
TILE_BIT_SHIFT enum valuebase_metric
tile_from_id(const id_t id)base_metricinlinestatic
tile_hash() const base_metricinline
tile_hash_from_id(const id_t id)base_metricinlinestatic
tile_metric()tile_metricinline
tile_metric(const header_type &)tile_metricinline
tile_metric(const uint_t lane, const uint_t tile, const float cluster_density, const float cluster_density_pf, const float cluster_count, const float cluster_count_pf, const read_metric_vector &read_metrics=read_metric_vector())tile_metricinline
tile_metric(const uint_t lane, const uint_t tile, const read_metric_vector &read_metrics=read_metric_vector())tile_metricinline
tile_metric(const tile_metric &metric, const read_metric_vector &read_metrics=read_metric_vector())tile_metricinline
tile_metric(const uint_t lane, const uint_t tile, const float cluster_count, const float cluster_count_pf, const read_metric_vector &read_metrics=read_metric_vector())tile_metricinline
tile_t typedefbase_metric
TYPE enum valuetile_metric
uint_t typedefbase_metric
ulong_t typedefbase_metric
update_phasing_if_missing(const size_t number, const float phasing, const float prephasing)tile_metricinline
ushort_t typedefbase_metric