Modules | |
Quality Metric Header | |
Functions | |
uint_t qscore_hist (const size_t n) const INTEROP_THROW_SPEC((model | |
const uint32_vector & qscore_hist () const | |
size_t size () const | |
uint_t sum_qscore () const | |
::uint64_t sum_qscore_cumulative () const | |
uint_t total_over_qscore (const uint_t qscore, const qscore_bin_vector_type &bins) const | |
uint_t total_over_qscore (const size_t qscore_index) const | |
::uint64_t total_over_qscore_cumulative (const size_t qscore_index) const | |
float percent_over_qscore (const size_t qscore_index) const | |
float percent_over_qscore_cumulative (const size_t qscore_index) const | |
::uint64_t total_over_qscore_cumulative (const uint_t qscore, const qscore_bin_vector_type &bins) const | |
float percent_over_qscore (const uint_t qscore_index, const qscore_bin_vector_type &bins) const | |
float percent_over_qscore_cumulative (const uint_t qscore, const qscore_bin_vector_type &bins) const | |
uint_t median (const qscore_bin_vector_type &bins=qscore_bin_vector_type()) const | |
bool is_cumulative_empty () const | |
Detailed Description
Per tile per cycle quality metrics
- Note
- All metrics in this class are supported by all versions
Function Documentation
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inline |
Check if the cumulative histogram has not been populated
- Returns
- true if cumulative histogram has not been populated
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Get the median q-score
If the median cannot be found, return the maximum integer. This function either requires the bins from the header or the index of the q-value for the first parameter. Note that the header is apart of the metric set (q_metrics).
- See also
- q_score_header::bins()
- Parameters
-
bins header bins
- Returns
- median q-score
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inline |
Percent of clusters over the given q-score
This calculates over the local histogram. This function takes an index corresponding to the q-value of interest. This index is provided by the index_for_q_value
in the metric header.
- See also
- q_score_header::bins()
- Parameters
-
qscore_index index of the q-score (for unbinned 29 is Q30)
- Returns
- percent of cluster over the given q-score
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inline |
Percent of clusters over the given q-score
This calculates over the local histogram. This function either requires the bins from the header or the index of the q-value for the first parameter. Note that the header is apart of the metric set (q_metrics).
- See also
- q_score_header::bins()
- Deprecated:
- This function will be removed in a future version.
- Parameters
-
qscore_index index of the q-score (for unbinned 29 is Q30) bins q-score histogram bins
- Returns
- percent of cluster over the given q-score
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inline |
Percent of clusters over the given q-score
This calculates over the local histogram. This function takes an index corresponding to the q-value of interest. This index is provided by the index_for_q_value
in the metric header.
- See also
- q_score_header::bins()
- Parameters
-
qscore_index index of the q-score (for unbinned 29 is Q30)
- Returns
- percent of cluster over the given q-score
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inline |
Percent of clusters over the given q-score
This calculates over the cumlative histogram. This function either requires the bins from the header or the index of the q-value for the first parameter. Note that the header is apart of the metric set (q_metrics).
- See also
- q_score_header::bins()
- Deprecated:
- This function will be removed in a future version.
- Parameters
-
qscore percentage of clusters over the given q-score value bins q-score histogram bins
- Returns
- percent of cluster over the given q-score
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inline |
Q-score value of the histogram
- Returns
- q-score value of the histogram
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Q-score histogram
- Returns
- q-score histogram
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Number of bins in the q-score histogram
- Returns
- number of bins in the q-score histogram
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Sum the q-score histogram
- Returns
- q-score histogram sum
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Sum the cumulative q-score histogram
- Returns
- cumulative q-score histogram sum
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Number of clusters over the given q-score
This calculates over the local histogram. This function either requires the bins from the header or the index of the q-value for the first parameter. Note that the header is apart of the metric set (q_metrics).
- See also
- q_score_header::index_for_q_value
- Deprecated:
- This function is deprecated in future versions
- Parameters
-
qscore percentage of clusters over the given q-score value bins q-score histogram bins
- Returns
- total of clusters over the given q-score
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inline |
Number of clusters over the given q-score
This calculates over the local histogram. This function takes an index corresponding to the q-value of interest. This index is provided by the index_for_q_value
in the metric header.
- See also
- q_score_header::index_for_q_value
- Parameters
-
qscore_index index of the q-score (for unbinned 29 is Q30)
- Returns
- total of clusters over the given q-score
|
inline |
Number of clusters over the given q-score
This calculates over the local histogram. This function takes an index corresponding to the q-value of interest. This index is provided by the index_for_q_value
in the metric header.
- See also
- q_score_header::index_for_q_value
- Parameters
-
qscore_index index of the q-score (for unbinned 29 is Q30)
- Returns
- total of clusters over the given q-score
|
inline |
Number of clusters over the given q-score
This calculates over the cumlative histogram. This function either requires the bins from the header or the index of the q-value for the first parameter. Note that the header is apart of the metric set (q_metrics).
- See also
- q_score_header::bins()
- Deprecated:
- This function will be removed in future versions
- Parameters
-
qscore percentage of clusters over the given q-score value bins q-score histogram bins
- Returns
- total of clusters over the given q-score