Per tile per cycle PhiX sequence error
See full class description
| float error_rate |
( |
| ) |
const |
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inline |
Calculated error rate, as determined by a spiked in PhiX control sample.
- Note
- Supported by all versions
- Returns
- error rate
| uint_t mismatch_cluster_count |
( |
const size_t |
n | ) |
const |
|
inline |
Number of clusters at given number of mismatches
0: no mismatches 1: 1 mismatch etc.
- Note
- Suppored by version 3, really unsupported on most platforms, some older MiSeq and HiSeq support
- Parameters
-
- Returns
- total number of errors
| const uint_array_t& mismatch_cluster_counts |
( |
| ) |
const |
|
inline |
Get an array of mismatch cluster counts
0: no mismatches 1: 1 mismatch etc.
- Note
- Suppored by version 3, really unsupported on most platforms, some older MiSeq and HiSeq support
- Returns
- vector of mismatch cluster counts
| uint_t mismatch_count |
( |
| ) |
const |
|
inline |
Size of mismatch array
- Note
- Suppored by version 3, really unsupported on most platforms, some older MiSeq and HiSeq support
- Returns
- total number of errors
| size_t phix_adapter_count |
( |
| ) |
const |
|
inline |
| float phix_adapter_rate |
( |
| ) |
const |
|
inline |
Calculated adapter trim rate of PhiX clusters
- Note
- Supported by v5
- Returns
- adapter trim rate
| float phix_adapter_rate_at |
( |
const size_t |
n | ) |
const |
|
inline |
| const float_vector& phix_adapter_rates |
( |
| ) |
const |
|
inline |