Plot a ROC curve for precision vs recall

Plot precision vs recall ROC curves from the selected filters. If pr.all is provided, overlay pass points to ALL curve.

hc_plot_roc(happy_roc, type, filter, subtype = "*", subset = "*",
  xlim = NA, ylim = NA)

Arguments

happy_roc

A happy_roc object.
type

Variant type.
filter

Variant filter.
subtype

Variant subtype. Default: *.
subset

Variant subset. Default: *.
xlim

Vector with x axis limits, e.g. c(0, 1). Default: auto-adjust.
ylim

Vector with y axis limits, e.g. c(0, 1). Default: auto-adjust.

Examples



# NOT RUN {
roc <- extract_metrics(happy_compare, table = "pr.all")
hc_plot_roc(roc, type = "INDEL", filter = "PASS")
# }