Corrected Intensity Version 2
This class provides an interface to reading the corrected intensity metric file:
- InterOp/CorrectedIntMetrics.bin
- InterOp/CorrectedIntMetricsOut.bin
The file format for corrected intensity metrics is as follows:
Header
illumina::interop::io::read_metrics (Function that parses this information)
byte 0: version number (2) byte 1: record size (48)
n-Records
illumina::interop::io::layout::base_cycle_metric (Class that parses this information)
2 bytes: lane number (uint16) 2 bytes: tile number (uint16) 2 bytes: cycle number (uint16)
illumina::interop::io::generic_layout<corrected_intensity_metric, 2> (Class that parses this information)
2 bytes: average cycle intensity (uint16) 2 bytes: average corrected intensity for channel A (uint16) 2 bytes: average corrected intensity for channel C (uint16) 2 bytes: average corrected intensity for channel G (uint16) 2 bytes: average corrected intensity for channel T (uint16) 2 bytes: average corrected int for called clusters for base A (uint16) 2 bytes: average corrected int for called clusters for base C (uint16) 2 bytes: average corrected int for called clusters for base G (uint16) 2 bytes: average corrected int for called clusters for base T (uint16) 4 bytes: number of base calls for No Call (uint32) 4 bytes: number of base calls for base A (uint32) 4 bytes: number of base calls for base C (uint32) 4 bytes: number of base calls for base G (uint32) 4 bytes: number of base calls for base T (uint32) 4 bytes: signal to noise ratio (float32)