1000Genomes-sv-json
"oneKg":[
{
"chromosome":"1",
"begin":1595369,
"end":1612441,
"variantType": "copy_number_variation",
"id": "esv3635753;esv3635754;esv3635755;esv3635756;esv3635757",
"allAn": 5008,
"allAc": 2702,
"allAf": 0.539537,
"afrAf": 0.6052,
"amrAf": 0.3675,
"eurAf": 0.5357,
"easAf": 0.5368,
"sasAf": 0.5797,
"reciprocalOverlap": 0.07555
}
],
Field | Type | Notes |
---|---|---|
chromosome | string | |
begin | integer | |
end | integer | |
variantType | string | |
id | string | |
allAn | integer | allele number for all populations. Non-zero integer. |
allAc | integer | allele count for all populations. Integer. |
allAf | floating point | allele frequency for all populations. Range: 0 - 1.0 |
afrAf | floating point | allele frequency for the African super population. Range: 0 - 1.0 |
amrAf | floating point | allele frequency for the Ad Mixed American super population. Range: 0 - 1.0 |
eurAf | floating point | allele frequency for the European super population. Range: 0 - 1.0 |
easAf | floating point | allele frequency for the East Asian super population. Range: 0 - 1.0 |
sasAf | floating point | allele frequency for the South Asian super population. Range: 0 - 1.0 |
reciprocalOverlap | floating point | range: 0 - 1. |