fusioncatcher-json

   "fusionCatcher":[
      {
         "genes":{
            "first":{
               "hgnc":"ETV6",
               "isOncogene":true
            },
            "second":{
               "hgnc":"RUNX1"
            },
            "isParalogPair":true,
            "isPseudogenePair":true,
            "isReadthrough":true
         },
         "germlineSources":[
            "1000 Genomes Project"
         ],
         "somaticSources":[
            "COSMIC",
            "TCGA oesophageal carcinomas"
         ]
      }
   ]

Field	Type	Notes
genes	genes object	5' gene & 3' gene
germlineSources	string array	matches in known germline data sources
somaticSources	string array	matches in known somatic data sources

genes

Field	Type	Notes
first	gene object	5' gene
second	gene object	3' gene
isParalogPair	bool	true when both genes are paralogs for each other
isPseudogenePair	bool	true when both genes are pseudogenes for each other
isReadthrough	bool	true when this fusion gene is a readthrough event (both are on the same strand and there are no genes between them)

gene

Field	Type	Notes
hgnc	string	gene symbol. e.g. MSH6
isOncogene	bool	true when this gene is an oncogene