gnomad-small-variants-json
"gnomad":{
"coverage":20,
"allAf":0.190317,
"maleAf":0.193,
"femaleAf": 0.1935,
"afrAf":0.222876,
"amrAf":0.121394,
"easAf":0.239802,
"finAf":0.136833,
"nfeAf":0.181282,
"asjAf":0.258278,
"othAf":0.186094,
"allAn":30796,
"maleAn":15096,
"femaleAn":15700
"afrAn":8664,
"amrAn":832,
"easAn":1618,
"finAn":3486,
"nfeAn":14916,
"asjAn":302,
"othAn":978,
"allAc":5861,
"maleAc":2930,
"femaleAc": 2931,
"afrAc":1931,
"amrAc":101,
"easAc":388,
"finAc":477,
"nfeAc":2704,
"asjAc":78,
"othAc":182,
"allHc":561,
"afrHc":208,
"amrHc":6,
"easHc":42,
"finHc":31,
"nfeHc":242,
"asjHc":13,
"othHc":19,
"maleHc":280,
"femaleHc":281,
"controlsAllAf":0.190317,
"controlsAllAn":30796,
"controlsAllAc":5861,
"lowComplexityRegion":true,
"failedFilter":true
}
Field | Type | Notes |
---|---|---|
coverage | int | average coverage (non-negative integer values) |
allAf | float | allele frequency for all populations. Range: 0 - 1.0 |
maleAf | float | allele frequency for male population. Range: 0 - 1.0 |
femaleAf | float | allele frequency for female population. Range: 0 - 1.0 |
controlsAllAf | float | allele frequency for the controls subset. Range: 0 - 1.0 |
allAc | int | allele count for all populations. Integer. |
maleAc | int | allele count for male population. Integer. |
femaleAc | int | allele count for female population. Integer. |
controlsAllAc | int | allele count for the controls subset. Integer. |
allAn | int | allele number for all populations. Non-zero integer. |
maleAn | int | allele number for male population. Non-zero integer. |
femaleAn | int | allele number for female population. Non-zero integer. |
controlsAllAn | int | allele number for the controls subset. Non-zero integer. |
allHc | int | count of homozygous individuals for all populations. Non-negative integer. |
maleHc | int | count of homozygous individuals for male population. Non-negative integer. |
femaleHc | int | count of homozygous individuals for female population. Non-negative integer. |
afrAf | float | allele frequency for the African / African American population. Range: 0 - 1.0 |
afrAc | int | allele count for the African / African American population. Integer. |
afrAn | int | allele number for the African / African American population. Non-zero integer. |
afrHc | int | count of homozygous individuals for African / African American population. Non-negative integer. |
amrAf | float | allele frequency for the Latino population. Range: 0 - 1.0 |
amrAc | int | allele count for the Latino population. Integer. |
amrAn | int | allele number for the Latino population. Non-zero integer. |
amrHc | int | count of homozygous individuals for Latino population. Non-negative integer. |
easAf | float | allele frequency for the East Asian population. Range: 0 - 1.0 |
easAc | int | allele count for the East Asian population. Integer. |
easAn | int | allele number for the East Asian population. Non-zero integer. |
easHc | int | count of homozygous individuals for East Asian population. Non-negative integer. |
finAf | float | allele frequency for the Finnish population. Range: 0 - 1.0 |
finAc | int | allele count for the Finnish population. Integer. |
finAn | int | allele number for the Finnish population. Non-zero integer. |
finHc | int | count of homozygous individuals for Finnish population. Non-negative integer |
nfeAf | float | allele frequency for the Non-Finnish European population. Range: 0 - 1.0 |
nfeAc | int | allele count for the Non-Finnish European population. Integer. |
nfeAn | int | allele number for the Non-Finnish European population. Non-zero integer. |
nfeHc | int | count of homozygous individuals for Non-Finnish European population. Non-negative integer |
othAf | float | allele frequency for the Other population. Range: 0 - 1.0 |
othAc | int | allele count for the Other population. Integer. |
othAn | int | allele number for the Other population. Non-zero integer. |
othHc | int | count of homozygous individuals for Other population. Non-negative integer |
asjAf | float | allele frequency for the Ashkenazi Jewish population. Range: 0 - 1.0 |
asjAc | int | allele count for the Ashkenazi Jewish population Integer. |
asjAn | int | allele number for the Ashkenazi Jewish population. Non-zero integer. |
asjHc | int | count of homozygous individuals for the Ashkenazi Jewish population. Non-negative integer |
sasAf | float | allele frequency for the South Asian population. Range: 0 - 1.0 |
sasAc | int | allele count for the South Asian population Integer. |
sasAn | int | allele number for the South Asian population. Non-zero integer. |
sasHc | int | count of homozygous individuals for the South Asian population. Non-negative integer. |
failedFilter | bool | True if this variant failed any filters (Note: we do not list the failed filters) |
lowComplexityRegion | bool | True if this variant is located in a low complexity region. |