gnomad4.0-small-variants-json
"gnomad": {
"coverage": 154,
"failedFilter": true,
"allAf": 0.5,
"allAn": 152428,
"allAc": 76214,
"allHc": 0,
"afrAf": 0.5,
"afrAn": 41608,
"afrAc": 20804,
"afrHc": 0,
"amiAf": 0.5,
"amiAn": 912,
"amiAc": 456,
"amiHc": 0,
"amrAf": 0.5,
"amrAn": 15314,
"amrAc": 7657,
"amrHc": 0,
"easAf": 0.5,
"easAn": 5196,
"easAc": 2598,
"easHc": 0,
"finAf": 0.5,
"finAn": 10632,
"finAc": 5316,
"finHc": 0,
"nfeAf": 0.5,
"nfeAn": 68050,
"nfeAc": 34025,
"nfeHc": 0,
"asjAf": 0.5,
"asjAn": 3472,
"asjAc": 1736,
"asjHc": 0,
"sasAf": 0.5,
"sasAn": 4834,
"sasAc": 2417,
"sasHc": 0,
"midAf": 0.5,
"midAn": 294,
"midAc": 147,
"midHc": 0,
"remainingAf": 0.5,
"remainingAn": 2116,
"remainingAc": 1058,
"remainingHc": 0,
"maleAf": 0.5,
"maleAn": 74544,
"maleAc": 37272,
"maleHc": 0,
"femaleAf": 0.5,
"femaleAn": 77884,
"femaleAc": 38942,
"femaleHc": 0
}
"gnomad-exome": {
"coverage": 53,
"allAf": 0.495074,
"allAn": 4060,
"allAc": 2010,
"allHc": 11,
"afrAf": 0.5,
"afrAn": 86,
"afrAc": 43,
"afrHc": 0,
"amrAf": 0.5,
"amrAn": 46,
"amrAc": 23,
"amrHc": 0,
"easAf": 0.491071,
"easAn": 112,
"easAc": 55,
"easHc": 0,
"finAf": 0.5,
"finAn": 306,
"finAc": 153,
"finHc": 0,
"nfeAf": 0.49503,
"nfeAn": 3018,
"nfeAc": 1494,
"nfeHc": 11,
"asjAf": 0.461538,
"asjAn": 26,
"asjAc": 12,
"asjHc": 0,
"sasAf": 0.486111,
"sasAn": 72,
"sasAc": 35,
"sasHc": 0,
"midAf": 0.5,
"midAn": 68,
"midAc": 34,
"midHc": 0,
"remainingAf": 0.493865,
"remainingAn": 326,
"remainingAc": 161,
"remainingHc": 0,
"maleAf": 0.495212,
"maleAn": 2924,
"maleAc": 1448,
"maleHc": 9,
"femaleAf": 0.494718,
"femaleAn": 1136,
"femaleAc": 562,
"femaleHc": 2
}
Field | Type | Notes |
---|---|---|
coverage | int | average coverage (non-negative integer values) |
maleAf | float | allele frequency for male population. Range: 0 - 1.0 |
maleAn | int | allele number for male population. Non-zero integer. |
maleAc | int | allele count for male population. Integer. |
maleHc | int | count of homozygous individuals for male population. Non-negative integer. |
femaleAf | float | allele frequency for female population. Range: 0 - 1.0 |
femaleAn | int | allele number for female population. Non-zero integer. |
femaleAc | int | allele count for female population. Integer. |
femaleHc | int | count of homozygous individuals for female population. Non-negative integer. |
remainingAf | float | allele frequency for the Other population. Range: 0 - 1.0 |
remainingAc | int | allele count for the Other population. Integer. |
remainingAn | int | allele number for the Other population. Non-zero integer. |
remainingHc | int | count of homozygous individuals for Other population. Non-negative integer |
allAf | float | allele frequency for all populations. Range: 0 - 1.0 |
allAn | int | allele number for all populations. Non-zero integer. |
allAc | int | allele count for all populations. Integer. |
allHc | int | count of homozygous individuals for all populations. Non-negative integer. |
afrAf | float | allele frequency for the African / African American population. Range: 0 - 1.0 |
afrAc | int | allele count for the African / African American population. Integer. |
afrAn | int | allele number for the African / African American population. Non-zero integer. |
afrHc | int | count of homozygous individuals for African / African American population. Non-negative integer. |
amiAf | float | allele frequency for Amish populations. Range: 0 - 1.0 |
amiAn | int | allele number for Amish populations. Non-zero integer. |
amiAc | int | allele count for Amish populations. Integer. |
amiHc | int | count of homozygous individuals for Amish populations. Non-negative integer. |
amrAf | float | allele frequency for the Latino population. Range: 0 - 1.0 |
amrAc | int | allele count for the Latino population. Integer. |
amrAn | int | allele number for the Latino population. Non-zero integer. |
amrHc | int | count of homozygous individuals for Latino population. Non-negative integer. |
easAf | float | allele frequency for the East Asian population. Range: 0 - 1.0 |
easAc | int | allele count for the East Asian population. Integer. |
easAn | int | allele number for the East Asian population. Non-zero integer. |
easHc | int | count of homozygous individuals for East Asian population. Non-negative integer. |
finAf | float | allele frequency for the Finnish population. Range: 0 - 1.0 |
finAc | int | allele count for the Finnish population. Integer. |
finAn | int | allele number for the Finnish population. Non-zero integer. |
finHc | int | count of homozygous individuals for Finnish population. Non-negative integer |
nfeAf | float | allele frequency for the Non-Finnish European population. Range: 0 - 1.0 |
nfeAc | int | allele count for the Non-Finnish European population. Integer. |
nfeAn | int | allele number for the Non-Finnish European population. Non-zero integer. |
nfeHc | int | count of homozygous individuals for Non-Finnish European population. Non-negative integer |
asjAf | float | allele frequency for the Ashkenazi Jewish population. Range: 0 - 1.0 |
asjAc | int | allele count for the Ashkenazi Jewish population Integer. |
asjAn | int | allele number for the Ashkenazi Jewish population. Non-zero integer. |
asjHc | int | count of homozygous individuals for the Ashkenazi Jewish population. Non-negative integer |
sasAf | float | allele frequency for the South Asian population. Range: 0 - 1.0 |
sasAc | int | allele count for the South Asian population Integer. |
sasAn | int | allele number for the South Asian population. Non-zero integer. |
sasHc | int | count of homozygous individuals for the South Asian population. Non-negative integer. |
midAf | float | allele frequency for the Middle Eastern population. Range: 0 - 1.0 |
midAc | int | allele count for the iddle Eastern population Integer. |
midAn | int | allele number for the iddle Eastern population. Non-zero integer. |
midHc | int | count of homozygous individuals for the iddle Eastern population. Non-negative integer. |
failedFilter | bool | True if this variant failed any filters (Note: we do not list the failed filters) |