gnomad-small-variants-json
"gnomad":{
"coverage":20,
"allAf":0.190317,
"maleAf":0.193,
"femaleAf": 0.1935,
"afrAf":0.222876,
"amrAf":0.121394,
"easAf":0.239802,
"finAf":0.136833,
"nfeAf":0.181282,
"asjAf":0.258278,
"othAf":0.186094,
"allAn":30796,
"maleAn":15096,
"femaleAn":15700
"afrAn":8664,
"amrAn":832,
"easAn":1618,
"finAn":3486,
"nfeAn":14916,
"asjAn":302,
"othAn":978,
"allAc":5861,
"maleAc":2930,
"femaleAc": 2931,
"afrAc":1931,
"amrAc":101,
"easAc":388,
"finAc":477,
"nfeAc":2704,
"asjAc":78,
"othAc":182,
"allHc":561,
"afrHc":208,
"amrHc":6,
"easHc":42,
"finHc":31,
"nfeHc":242,
"asjHc":13,
"othHc":19,
"maleHc":280,
"femaleHc":281,
"controlsAllAf":0.190317,
"controlsAllAn":30796,
"controlsAllAc":5861,
"lowComplexityRegion":true,
"failedFilter":true
}
| Field | Type | Notes |
|---|---|---|
| coverage | int | average coverage (non-negative integer values) |
| allAf | float | allele frequency for all populations. Range: 0 - 1.0 |
| maleAf | float | allele frequency for male population. Range: 0 - 1.0 |
| femaleAf | float | allele frequency for female population. Range: 0 - 1.0 |
| controlsAllAf | float | allele frequency for the controls subset. Range: 0 - 1.0 |
| allAc | int | allele count for all populations. Integer. |
| maleAc | int | allele count for male population. Integer. |
| femaleAc | int | allele count for female population. Integer. |
| controlsAllAc | int | allele count for the controls subset. Integer. |
| allAn | int | allele number for all populations. Non-zero integer. |
| maleAn | int | allele number for male population. Non-zero integer. |
| femaleAn | int | allele number for female population. Non-zero integer. |
| controlsAllAn | int | allele number for the controls subset. Non-zero integer. |
| allHc | int | count of homozygous individuals for all populations. Non-negative integer. |
| maleHc | int | count of homozygous individuals for male population. Non-negative integer. |
| femaleHc | int | count of homozygous individuals for female population. Non-negative integer. |
| afrAf | float | allele frequency for the African / African American population. Range: 0 - 1.0 |
| afrAc | int | allele count for the African / African American population. Integer. |
| afrAn | int | allele number for the African / African American population. Non-zero integer. |
| afrHc | int | count of homozygous individuals for African / African American population. Non-negative integer. |
| amrAf | float | allele frequency for the Latino population. Range: 0 - 1.0 |
| amrAc | int | allele count for the Latino population. Integer. |
| amrAn | int | allele number for the Latino population. Non-zero integer. |
| amrHc | int | count of homozygous individuals for Latino population. Non-negative integer. |
| easAf | float | allele frequency for the East Asian population. Range: 0 - 1.0 |
| easAc | int | allele count for the East Asian population. Integer. |
| easAn | int | allele number for the East Asian population. Non-zero integer. |
| easHc | int | count of homozygous individuals for East Asian population. Non-negative integer. |
| finAf | float | allele frequency for the Finnish population. Range: 0 - 1.0 |
| finAc | int | allele count for the Finnish population. Integer. |
| finAn | int | allele number for the Finnish population. Non-zero integer. |
| finHc | int | count of homozygous individuals for Finnish population. Non-negative integer |
| nfeAf | float | allele frequency for the Non-Finnish European population. Range: 0 - 1.0 |
| nfeAc | int | allele count for the Non-Finnish European population. Integer. |
| nfeAn | int | allele number for the Non-Finnish European population. Non-zero integer. |
| nfeHc | int | count of homozygous individuals for Non-Finnish European population. Non-negative integer |
| othAf | float | allele frequency for the Other population. Range: 0 - 1.0 |
| othAc | int | allele count for the Other population. Integer. |
| othAn | int | allele number for the Other population. Non-zero integer. |
| othHc | int | count of homozygous individuals for Other population. Non-negative integer |
| asjAf | float | allele frequency for the Ashkenazi Jewish population. Range: 0 - 1.0 |
| asjAc | int | allele count for the Ashkenazi Jewish population Integer. |
| asjAn | int | allele number for the Ashkenazi Jewish population. Non-zero integer. |
| asjHc | int | count of homozygous individuals for the Ashkenazi Jewish population. Non-negative integer |
| sasAf | float | allele frequency for the South Asian population. Range: 0 - 1.0 |
| sasAc | int | allele count for the South Asian population Integer. |
| sasAn | int | allele number for the South Asian population. Non-zero integer. |
| sasHc | int | count of homozygous individuals for the South Asian population. Non-negative integer. |
| failedFilter | bool | True if this variant failed any filters (Note: we do not list the failed filters) |
| lowComplexityRegion | bool | True if this variant is located in a low complexity region. |