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Version: 3.24 (unreleased)

1000Genomes-sv-json

"oneKg":[
{
"chromosome":"1",
"begin":1595369,
"end":1612441,
"variantType": "copy_number_variation",
"id": "esv3635753;esv3635754;esv3635755;esv3635756;esv3635757",
"allAn": 5008,
"allAc": 2702,
"allAf": 0.539537,
"afrAf": 0.6052,
"amrAf": 0.3675,
"eurAf": 0.5357,
"easAf": 0.5368,
"sasAf": 0.5797,
"reciprocalOverlap": 0.07555
}
],
FieldTypeNotes
chromosomestring
begininteger
endinteger
variantTypestring
idstring
allAnintegerallele number for all populations. Non-zero integer.
allAcintegerallele count for all populations. Integer.
allAffloating pointallele frequency for all populations. Range: 0 - 1.0
afrAffloating pointallele frequency for the African super population. Range: 0 - 1.0
amrAffloating pointallele frequency for the Ad Mixed American super population. Range: 0 - 1.0
eurAffloating pointallele frequency for the European super population. Range: 0 - 1.0
easAffloating pointallele frequency for the East Asian super population. Range: 0 - 1.0
sasAffloating pointallele frequency for the South Asian super population. Range: 0 - 1.0
reciprocalOverlapfloating pointrange: 0 - 1.