cosmic-json

{
   "id":"COSV58272668",
   "numSamples":8,
   "refAllele":"-",
   "altAllele":"CCT",
   "histologies":[
      {
         "name":"carcinoma (serous carcinoma)",
         "numSamples":2
      },
      {
         "name":"meningioma (fibroblastic)",
         "numSamples":1
      },
      {
         "name":"carcinoma",
         "numSamples":1
      },
      {
         "name":"carcinoma (squamous cell carcinoma)",
         "numSamples":1
      },
      {
         "name":"meningioma (transitional)",
         "numSamples":1
      },
      {
         "name":"carcinoma (adenocarcinoma)",
         "numSamples":1
      },
      {
         "name":"other (neoplasm)",
         "numSamples":1
      }
   ],
   "sites":[
      {
         "name":"ovary",
         "numSamples":2
      },
      {
         "name":"meninges",
         "numSamples":2
      },
      {
         "name":"thyroid",
         "numSamples":2
      },
      {
         "name":"cervix",
         "numSamples":1
      },
      {
         "name":"large intestine (colon)",
         "numSamples":1
      }
   ],
   "pubMedIds":[
      25738363,
      27548314
   ],
   "confirmedSomatic":true,
   "drugResistance":true, /* not in this particular COSMIC variant */
   "isAlleleSpecific":true
}

Field	Type	Notes
id	string	COSMIC Genomic Mutation ID
numSamples	int
refAllele	string
altAllele	string
histologies	count array	phenotypic descriptions
sites	count array	tissue types
pubMedIds	int array	PubMed IDs
confirmedSomatic	bool	true when the variant is a confirmed somatic variant
drugResistance	bool	true when the variant has been associated with drug resistance

Count

Field	Type	Notes
name	string	description
numSamples	int