Examples

Application Examples

This section will introduce you to applications that allow you to mimic SAV functionality from the command line.

• SAV Analysis Tab

API Examples

If you are like us, then you will like to look at some example code. The src/examples folder contains commented sample code showing how to use a variety of Illumina InterOp features in both C++ and C#. This section displays each of the examples in that folder with additional commentary.

• Reading a binary InterOp file
• Reporting Tile Metrics
• Reporting Extraction Metrics
• Reporting simple statistics
• Calculating an SAV-like Summary Table
• Calculating an SAV-like Imaging Table

Python Interactive Tutorials

• SAV Summary Table
• Q-Score Histogram
• Low-level Extraction